Microsatellites /Tandem Repeats database

Genome: Bacillus halodurans

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
73576ATC-ATC-CTC-CTC-ATC-ATC-GTC-ATC-ATC-GTC-TTC-CTCDesign primers
280382GATCACCATCACGATCACCATCACGDesign primers
309225TTATTTTTATTATTTTTCTTAATTTTATTDesign primers
333195TACAAATTTCTATGAATTTCTACAATTTCCDesign primers
392711GAGAGCCCTGAGAATCCTGAGAACCCTGAGAATCCAGAGAACCCAGAGATTCCTGAGDesign primers
664615TACTACTAATTTCTACTTATTTCTACTTATTDesign primers
830011TCAAGGA-TAACGGA-TAAAGGA-TAAAGGA-TAAAGGA-TAAAGGADesign primers
1049448CAAAGACGAAGACAAAGACAAAAADesign primers
1314563TTCCGAAAAAAGAGATGCCAAAAAAAGAAATGCCAAAAAAAGAAATDesign primers
1540410AAGTGTATGAAGACGTGTACGAAGAAGTGAAAGAAGADesign primers
1778068ATTTCC-ATTGCC-ATTGCC-ATTGCCDesign primers
1980924GATGAAGATGACGAGGAAAATGAAGADesign primers
2207114TATGGG-AATGGG-TATGGG-TATGGA-TDesign primers
2425187CTTCTTTTTCTTCTTTTTCCTCTTDesign primers
2460869TG-TC-TA-AC-CT-TT-GA-TC-GA-TC-TT-AT-CA-AA-CT-TT-TG-AT-CA-AT-CT-TG-TC-AA-AC-CT-TT-TT-TC-TA-TC-TDesign primers
2474734AATCTAAATTTAAATCGAAATCTAAATDesign primers
2516297GCGTTTTTCTTAGTTTTTCTGCGTTTTTATGDesign primers
2621984TGCGGCTGCTGCGGTTGCTGCGGCTGTTDesign primers
2832164TTGTAGCCTTTTGTATCTTTCTGTAGCTTTDesign primers
2995782GTTGCTCTGGTTGCTCAGGTTGTTCTGGDesign primers
3002147GGACCAAAATTTGGACCGTAATTTGGGCCAAAATTCGGDesign primers
3583432GGTTTTGAC-CGTTTTGAC-CGTTTTGAC-CGTTTTGACDesign primers
3643006TATTAACATTAAAATTAATATTAADesign primers
3643135AACGAAACTGC-AAAAAAACTGC-AAAAAAACTGC-AAAAAAACTGC-AADesign primers
3645086TAACATTAAAATTAACAATAACGTTAACCTTADesign primers
3693667CAAAGTTAAAGTCAAGGTCAAAGTCDesign primers
3716037CAATGAAAATGACGATGACAATGGDesign primers
3857330TCAAGATCATCTGCTGGTTCTTCTTCAAGGTCAGCTGCTGGATCTTCTTCAAGATCGGCTGCTGGATCCTCTTCAAGATCAGCTGCTGGATCCTCTDesign primers

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