Microsatellites /Tandem Repeats database

Genome: Rhodococcus pyridinivorans SB3094

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
107463GGATCGCCTTCGCTCCGTGCTGAT-GGATCGCCTTCGCTCCGTGCTGAT-GGATCGCCTTCGCTCCGTACGGATDesign primers
234612GCACCT-GCACCT-GCACCT-GCACCT-GCACCTDesign primers
284684CCAGTGACACCGACTTCGAGTGACACCGACTTCGAGTGACACCGACTTDesign primers
340078CGGCGCGGCCGGGACGGCCTGTT-CTACGCGGCCGGGACGGCCTGTT-CCACGCGGCCGGGACGGCCTGTT-CCACGCGGCCGGGACGGCCTGTT-CCACGCGGCCGGGACGGCCTGTT-CCACGCGGCCGGGACGGCCTGTT-CTACGCGGCCGGGACGGCCTGTTDesign primers
381386GGTGGCGCGACT-AGTGGCGCGACT-AGTGGCGCGACTDesign primers
381538TCAGTCGCGTCATCAGTCGCGCCATCAGTCGCGCCADesign primers
391857AGGAGCAGCAACAGCAGGCCGCCGCGCAGCAGCAACAGCAGGCCGCCGCGCAGCAGCAACAGCAGGCCGCCGDesign primers
423959CGCAGCGCAGCCGGTCGA-CACAGCGCAGCCGGTCGA-CACAGCGCAGCCGGTCGA-CACAGCGCAGCCGGTCGADesign primers
464604CCTGCATGTTCGAGC-ACTGCATGTTCGAGC-ACTGCATGTTCGAGCDesign primers
511872ACCGGCACG-ACCGGCACG-ACCGGCACGDesign primers
560255GCCGCCGAACTCTTCGACGCCGAACTCTTCGACGCCGAACTCTTCDesign primers
570457TACCGATACGAGTGG-CACCGATACGAGTGG-CACCGATACGAGTGGDesign primers
639155CCGGTG-CCGGTG-CCGGTG-CCGGTGDesign primers
711631GCGGCGGCC-GCGGCGGCC-GCGGCGGCCDesign primers
799613CTCGCCGCC-CTCGCCGCC-CTCGCCGCCDesign primers
1044772CGAACGCCCCTGCCTCGG-CGAACGTCCCTGCCTCGG-CGAACGTCCCTGCCTCGG-CGAACGTCCCTGCCTCGGDesign primers
1067630CCGGTGTCCCCGCGAC-TCGGTGTCCCCGCGAC-TCGGTGTCCCCGCGACDesign primers
1246362GCCCGATCGGAAGCGACGGGCGCCGACCGATCAGAAGCGACGGGCGCCGACCGATCAGAAGCGACGGGCGCCDesign primers
1371400GCACGG-GCACGG-GCACGG-GCACGGDesign primers
1555367CGCGACACGGCAGTGCGATCGGTGCCGGACACGGCAGTGCGATCGGTGCCGGACACGGCAGTGCGATCGGTGDesign primers
1589440CGTGAGTCCTCGACTCAGCGCCTACGTGAGTCTTCGACTCAACGCCTACGTGAGTCTTCGACTCAACGCCTADesign primers
1611699CGCGGCCCGACGGGCCTGAGACGACGGGGCCCGACGGGCCTGAGACGACGGGGCCTGACGGGCCTGAGACGADesign primers
1682894CGGTGCCCACTCCGCTGTGCCCACTCCGCTGTGCCCACTCCGDesign primers
1705109CGACCGTCACGGAGTGACGCCGTGG-ACACCGTCACGGAGTGACGCCGTGG-ACACCGTCACGGAGTGACGCCGTGGDesign primers
1709297GGGTCACTAGACCGCAGAGCGGCGGGATCACTAGACCGCAGAGCGGCCGGGTCACTGAACCGCAGAGCGGCGDesign primers
1746376CACGTCGCCACCGGGCGGGTCGCCCAGGTTGCCACCGGGCGGGTCGCCCACGTCGCCACCGGGCGGGTTGCCDesign primers
1869598CCGCCCGTGTCGCACCGGCGTCGA-ACGCCCGTGTCGCACCGGCGTCGA-ACGCCCGTGTCGCACCGGAGTCGADesign primers
1963714CGGTGC-CGGTGC-CGGTGC-CGGTGCDesign primers
2028062GGCCGTCTTCGACACCGTGTCCGTCTTCGACACCGTGTCCGTCTTCGACACCGTDesign primers
2033479GTCACACCGGGGTCCGCAGCCACACCGGGGTCCGCAGCCACACCGGGGTCCGCADesign primers
2033573CTCGGCGCG-CTCGGCGCG-CTCGGCGCG-CTCGGCGCGDesign primers
2062190CCAGTGATCGACGGGCGCGGGCGCCCAGTGGTCGACGGGCGCGGGCGCCCAGTGGTCGACGGGCGCAGGCGCDesign primers
2063575GTCCGCACCGACCGACGGGTCGT-TTCTGCACCGACCGACGGGTCGT-TTCTGCACCGACCGACGGGTCGT-TTCTGCACCGACCGACGGGTCGTDesign primers
2072510CTGCAGTTCTCAGAGCACTACAGTTCTCAGAGCACTGCAGTTCTCAGAGCADesign primers
2106019GCTCGC-CCTCGC-CCTCGC-CCTCGC-CCTCGC-CCTCGCDesign primers
2109239GGTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCTDesign primers
2192050ATGACACCGGTGCGGAGTACCGCC-GTGACACCGGTGCGGAGTACCGCC-GTGACACCGCTGCGGAGTACCGCC-GTGACACCGCTGCGGAGTACCGCCDesign primers
2260752GCCCCAGGATGCAGTGCCCCAGGATGCAGCGTCCCAGGATGCAGTGCCCGAGGATGCAGTGCCCGAGGATGCAGTDesign primers
2274324CTGTTGCGACGGAGAACC-CTGTTGCGACGGAGAACC-CTGTTGCGACGGAGGACCDesign primers
2293476GGATCAGTCGCGCTCGACCGCGGTGCGGTCAGTCGCGCTCGACCGCGGTGCGGTCAGTCGCGCTCGACCGCGGTGDesign primers
2407599TGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATCDesign primers
2426465CGGTTCGACACCGAG-GGGTTCGACACCGAG-GGGTTCGACACCGAGDesign primers
2437238GCAGGT-GCAGGT-GCAGGT-GCAGGTDesign primers
2479047CACTCGCCTGCGACTCGGTGACAC-TGCTCGCCTGCGACTCGGTGACAC-TGCTCGCCTGCGACTCGGTGACAC-TGCTCGCCTGCGACTCGGTGACAC-TGCTCGCCTGCGACTCGGTGACAC-TGCTCGCCTGCGACTCGGTGACACDesign primers
2517133CACGCAGCGCGGTGCGCTCGATCAGACACAGCGCGGTGCGCTCGATCAGACACAGCGCGGTGCGCTCGATCADesign primers
2581502GCCACGGAGCTGAAGCGACCGACAGTCACGGGGCTGAAGCGACCGACAGTCACGGGGCTGAAGCGACCGACADesign primers
2688001AGGCCGACGGGGTCCAGGCCGACAGGGTCCAGGCCGACGGGGTCCDesign primers
2999181GCTCGC-CCTCGC-CCTCGC-CCTCGC-CCTCGC-CCTCGCDesign primers
3002401GGTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCT-GCTGTTCGGCTGACCCTDesign primers
3085212ATGACACCGGTGCGGAGTACCGCC-GTGACACCGGTGCGGAGTACCGCC-GTGACACCGCTGCGGAGTACCGCC-GTGACACCGCTGCGGAGTACCGCCDesign primers
3153914GCCCCAGGATGCAGTGCCCCAGGATGCAGCGTCCCAGGATGCAGTGCCCGAGGATGCAGTGCCCGAGGATGCAGTDesign primers
3167486CTGTTGCGACGGAGAACC-CTGTTGCGACGGAGAACC-CTGTTGCGACGGAGGACCDesign primers
3186638GGATCAGTCGCGCTCGACCGCGGTGCGGTCAGTCGCGCTCGACCGCGGTGCGGTCAGTCGCGCTCGACCGCGGTGDesign primers
3300761TGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATC-AGTTCCCCTGTGCGGATCDesign primers
3319627CGGTTCGACACCGAG-GGGTTCGACACCGAG-GGGTTCGACACCGAGDesign primers
3330400GCAGGT-GCAGGT-GCAGGT-GCAGGTDesign primers
3413489GTAACCGTCTGACAGAGTAGCCGTCTGACAGAGTAGCCGTCTGACAGADesign primers
3459357CGAAGAGGATTCGGG-CGAGGAGGATTCGGG-CGAGGAGGATTCGGG-CGAGGAGGATTCGGG-CGAGGAGGATTCGGGDesign primers
3523973TTCGGCGCTCGGGTCCGGCGCTCGGGTCCGGCGCTCGGGDesign primers
3546778GCAGTC-GCAGTC-GCAGTC-GCAGTCDesign primers
3581100GCCTGCTGGTCGTAACCG-CCCTGCTGGTCGTAACCG-CCCTGCTGGTCGTAACCGDesign primers
3636711CACCCGGTGGTGACGGCGCCGGGGCGCCCGGTGGTGACGGCACCGGGGCGCCCGGTGGTGACGGCGCCGGGGDesign primers
3737873CGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGA-AGCCGADesign primers
3869525GCTCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCC-GAGCCCDesign primers
4048919ATTCGGTGACACGAGATTCGGTGACACAAGGTTCGGTGACACGAGDesign primers
4067785TCGCTG-CCGCTG-CCGCTG-CCGCTG-CCGCTG-CCGCTGDesign primers
4280328CCGGCGGGAGGCACCGGGCGCGAGTCCGCGGGAGGCACCGGGCGCGAGTCCGCGGGAGGCACCGGGCGCGAGDesign primers
4333263CGTCTT-CGTCTT-CGTCTT-CGTCTT-CGTCTTDesign primers
4372047GACCACCGAGGTCGTGAGCACCGAGGTCGTGAGCACCGAGGTCGTDesign primers
4446078GTGTCCGGAGACAAGGCCGTGTCCGGAGACAAGGTCGTGTCCGGAGACAAGGCCDesign primers
4495004GACACCCGGGCGGACGGCACAGCCACCCGGGCGGAGGGCACAGCCACCCGGGCGGACGGCACADesign primers
4518115GCTGCTCGACGACGA-ACTGCTCGACGACGA-ACTGCTCGACGACGADesign primers
4646488GTGACGATCAGGGCA-GTGATGATCAGGGCA-GTGATGATCAGGGCA-GTGATGATCAGGGCADesign primers
4670558CCCCGCCCGTGATCCGACACCGCCCGTGATCCGACACCGCCCGTGATCCGADesign primers
4794293TCGGTTGTGTTCACT-TCGGTTGTGTTCACT-TCAGTTGTGTTCACTDesign primers
4896991CCCGGTGCC-CCCGGTGCC-CCCGGTGCCDesign primers
4932578TCCGACCTCGCGATCACCTGAGCG-GTCGACCTCGCGATCACCTGAGCG-GTCGACCTCGCGATCACCTGAGCGDesign primers
5138231GCGACTTCCGGTACCGAA-CCGACTTCCGGTACCGAA-CCGACTTCCGGTACCGAADesign primers
5138286CGACTTCCGGTGCCGAAC-CGACTTCCGGTGCCGAAC-CGACTTTCGGTGCCGAACDesign primers
5161521CGGTGC-CGGTGC-CGGTGC-CGGTGCDesign primers

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