Microsatellites /Tandem Repeats database

Genome: Amycolatopsis mediterranei S699

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
333685CTGCCC-CCGCCC-CCGCCC-CCGCCC-CCGCCC-CCGCCCDesign primers
774883GGACCG-GGACCG-GGACCG-GGACCG-GGACCGDesign primers
834878CGACACCCCCGCCGCCGACCACAACGCCCCCGCCGCCGACCACGACCCCGCCGCCGCCGACCADesign primers
868791CGCCATGACCGCCATGCGCCGTGACCGCCATGCGCCGTGACCGCCATGDesign primers
1136372GCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTC-CCCGCCAGCGCAGTCDesign primers
1205292GTCGACCCGTCAATCACGCGAGTCGACCCTTCGATCACGCGAGTCGACCCTTCGATCACGCGADesign primers
1290875CCCGGC-CCCGGC-CCCGGC-CCCGGCDesign primers
1452798GCCGCCGGCCGCCAGCCGCCG-GCCGCCGGCCGCCAGCCGCCG-GCCGCCGGCCGCCAGCCGCCADesign primers
1479858GGCTTCCGGGGTCTTCCGGGGGTTTCCGGGDesign primers
1661700CTCCAGCAGCCTCCGCCACGCCAGCAGCCTCCGCCACTCCAGCAGCCCCCGCCADesign primers
1702249CGTGATTGGAGGGTCGACTCGCGTGATTGGGAGGTCGACTCGCGTGTCTGGAGGGTCGACTCGDesign primers
1868485AGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGT-GGGGCGGGCTGTGGTDesign primers
1944951CACCGA-CGCCGA-CACCGA-CACCGA-CACCGA-CACCGADesign primers
2194455CAGCCGCGGCCACGGCCGCAGCCGCAGCCACGGCCGCAGCCGCAGCCACGGCCGDesign primers
2390490TCGGGCGTC-TCGGGCGTC-TCGGGCGTCDesign primers
2460859GAGCGGGCCC-GGGCGGGCCC-GGGCGGGCCC-GGGCGGGCCCDesign primers
2548161TCGGCACGGCCCG-GCGGCACGGCCCG-GCGGCACGGCCCGDesign primers
2718210CAACCAGGACAAGGCCAATCAGGACAAGGCCAATCAGGACAAGGCDesign primers
2767821TGGGCTCTGCTGC-GGGGCTCTGCTGC-GGGGCTCTGCTGC-GGGGCTCTGCTGCDesign primers
2927566CGCGAGTCGACCCTCCAATCACGCGAGTCGACCTCCCAATCACGCGAGTCGACGCTTCAATCADesign primers
2927642TCTGGGTGCGCGAGCCGACCCTTCGGGTGCGCGAGCCGACCCTCTGAGTACGCGAGCCGACCCDesign primers
3058492GAACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGA-CGACTCGCGTGCCTGGACGGADesign primers
3069682CGTGTCGTCCGCCTGGGTACGCGTGTCGTCCGTCGGGGTACGCGTGTCGTCCGGCTGGGTACGDesign primers
3180378CTGAGTACGCGTGTCGTCCGGCTGAGTACGCGTGTCGTCCACCGGGGTACGCGTGTCGTCCGGDesign primers
3226131CCGTCACGACACCGAGCGTCACGACACCGAGCGTCACGACACCGAGCGTCACGACACCGACCGTCACGAGACCGADesign primers
3337973CGATCCGGACAGCGCCGATCCGGGCAGCGCCGATCCGGGCAGCGCDesign primers
3519280GGCCAGGCG-GGCCAGGCG-GGCCAGGCGDesign primers
3634345CGGGACCGC-CGGGACCGC-CGGGACCGCDesign primers
3733350CG-GC-AC-CC-CG-CC-CA-CC-GG-GA-CC-CC-GC-CC-AC-CG-GC-AC-TC-CG-CC-CA-CC-GG-GA-CC-CC-GC-CC-ACDesign primers
3748012CCGGACGACTCGCGTACCTGG-ACGGACGACTCGCGTACCTGG-ACGGACGACGCGCGTACCTGG-GCGGACGACGCGCGTACCTGGDesign primers
3920475GGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGA-CGCTGAGCAAGGADesign primers
4504390CGTGGTGGTGGTCGTGGTCGTGGTCGTGGGGGTGGTDesign primers
4546649GAAAACTCGCGTACCTGGACG-GACGACTCGCGTACCTGGACG-GACGACTCGCGTACCTGGACG-GACGACTCGCGTACCTGGACGDesign primers
4689530GTGGGCTGA-GTGGGCTGA-GTGGGCTGADesign primers
4790429GCCGCCGAG-GCCGCCGAG-GCCGCCGAG-GCCGCCGAGDesign primers
4796776TTGTGCACGACGGCGCGG-TTGTGGACGACGGCGCGG-TTGTGGACGACGGCGCGG-TTGTGGACGACGGCGCGGDesign primers
5058120TTCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAA-GGCGGGGTTGCGGAGAGCGGCAADesign primers
5557307CGCAG-TGCAG-CGCAG-CGCAG-CGCAG-CGCAGDesign primers
5557540CAGGC-CAGGC-CAGGC-CAGGC-CAGGCDesign primers
5562575GTCGACCCTCCAGACACGCGTGTCGTCCGTCCAGACACGCGTGTCGTCCGTCCAGACACGCGTDesign primers
5626080GACAGTGCCGGAAGAGACACTGCCGGAAGAGACACTGCCGGAAGADesign primers
5710216GGGCGG-GGGCGG-GGGCGG-GGGCGGDesign primers
5817476GGAATGCCACTGCCCGGGATGCCACTGCCCGGGATGCCACTGCCCDesign primers
6014202CGTCGAGGC-CGTCGAGGC-CGTCGAGGCDesign primers
6108963GCTGGG-GCTGGG-GCTGGG-GCTGGG-GCTGGGDesign primers
6549061CGGGCCGCC-CGGGCCGCC-CGGGCCGCCDesign primers
6713533CGTGTCTGGAGGGTCGACACGCGTGACTGGACGGTCGACACGCGTGACTGGACGGTCGACACGDesign primers
6790676GTCCGGTCAG-ATCCGGTCAG-ATCCGGTCAG-ATCCGGTCAGDesign primers
6816880TCGCTTTGCGTGGCTTTGCGTGGCTTTGCGDesign primers
6818898GGTAACTGC-GGTAACTGC-GGTAACTGCDesign primers
6863249TCGCGG-TCGCGG-TCGCGG-TCGCGGDesign primers
7206083CCGTCGACAAT-CCGTCGACAAT-CCGTCGACAGTDesign primers
7433674TCGTGTCGTCCGTGCAGGTAC-GCGTGTCGTCCGTGCAGGTAC-GCGTGTCGTCCGTGCGGGTACDesign primers
7726144CAGCGTGTCGTCCGTCCAGGT-ACGCGTGTCGTCCGTCCAGGT-ACGCGTGTCGTCCGTCCAGGTDesign primers
7761119CCCGGGG-GCCGGGG-GCCGGGG-GCCGGGG-GCCGGGG-GCCGGGGDesign primers
7761306CCAGATACGCGAGTCGTCCGCCTAGGTACGCGAGTCGTCCGCCCAGGTACGCGAGTCGTCCGCDesign primers
8214125GATGCCCCGCCAATCACGCGAGATGCCTCTCCAATCACGCGAGATGCCCCGCTGATCACGCGADesign primers
8261442GCGCCGTTGACCCCGCCGTTGACCGAGCCGTTGACCDesign primers
8289949CGGCTCGGCCCGGCCCGGCCCGGCTCGGCCDesign primers
8290027GGTTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTCDesign primers
8290081CGGCCCAGCT-CGGCCCAGCT-CGGCCCGGCT-CGGCCCGGCT-CGGCCCGGCTDesign primers
8290132GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTCDesign primers
8304486GACGTC-GACGTC-GACGTC-GACGTC-GACGTCDesign primers
8315873CTGACCGGCGCT-TTGACCGGCGCT-TTGACCGGCGCTDesign primers
8346824GGCTGGTCGTACTGC-TGCTGGTCGTACTGC-TGCTGGTCGTACTGCDesign primers
8527146GAACGCGTGTCGTCCGCCCAGGCACGCGTGTCGTCCGCCCAGGCACGCGTGTCGTCCACCCAGDesign primers
8551028CGAACTGTGTGAC-CGAACTGTGTGAC-CTAACTGTGTGACDesign primers
8651038CGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGG-GGCCGGDesign primers
8744114TGGCTTGGTCCTGGCTTGGTTCTGACTTGGTCCTGGCTTGGTCCTGGCTTGGTCCDesign primers
9047194CCTGAAGA-CCTGAAGA-CCTGAAGADesign primers
9398182GGGTGGCCAGGCGGGCGGGGTGGCCAGGCAGGCGGGGTGGCCAGGCAGGCGDesign primers
9448255CGGTGCCGGACTTCT-CGGGGCCGGACTTCT-CGGGGCCGGACTTCT-CGGGGCCGGACTTCTDesign primers
9471948CGACCCTCCAAGCACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGC-CGACCCTCCAGACACGCGAGCDesign primers
9594873GCACGCCGTTCGGCTGCCCGCCGTTCGGCTGCCCGCCGTTCGGCTDesign primers
9777138GCCGTGTCGTCCCTTCAATCA-CGCGTGTCGTCCCTTCAATCA-CGCGTGTCGTCCCTTCAATCADesign primers
9778470CACGTGTCGTCCCTTCAATCACGCGTGTCGTCCCTTCAATCACGCGTGTCGTCCCTTCAGTCACGCGTGTCGTCCCTTCAGTCADesign primers

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