Microsatellites /Tandem Repeats database

Genome: Sphingobium chlorophenolicum L-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
30704CGG-CGG-CGA-CGG-CGA-CGG-CGG-CGA-CGG-CGGDesign primers
84838CGGAGGCGGAGTGGGAGGCTGAGGDesign primers
112362GCGGCGGGGGACGGCGCGGGGCGGCGGCGCDesign primers
142391TAGCCGTAGCGGTTGCCGTCGCCGDesign primers
154805TTGTGCCGGGGCTCGGGCCGGGGCTCGGGCCGGGGCDesign primers
225684CTC-CGC-CGC-CGC-CCC-CGC-CTC-CGCDesign primers
225716CCG-CCG-CCT-CCG-CCC-CCG-CCG-CCT-CCG-CCGDesign primers
261158GCGGCAGCGTCACCGGCACCGGCADesign primers
288325GCAGCGCCAGCGGCTGCGGCAGCGDesign primers
340363ATGCCCGATAT-GGGCCCGATAT-GGGCCCGATATDesign primers
340890CGT-TGG-CGG-CGA-TGG-CGG-CGT-CGG-CGGDesign primers
359649GCGGCGGCGGCGGCGGGGGCGGCGDesign primers
388061CGCCGCCACCGCCGCCGGCGCCGGDesign primers
446025CCGGTTGAAACCGCCTCGGTCGAAACTGCCCCGGTCGAAACCGCCDesign primers
564197GTCGTCGGCGCTGTCGTCCGTGCTGTCGTCGTCGCTDesign primers
711817TTTGCTGGTTTGCTCGTTTGCGGGDesign primers
740314CGTTCGCAGCGTTCGCGGCGTTGTCGGCAGCGTTCGCGGCGTTGTCAGCAGCGTTAGCGGCGTDesign primers
747150TTCGAGGTCGAGTTCGAATTCAAGDesign primers
814514CGGCATCCC-CGGCATCCC-CGGCATTCCDesign primers
836821CTTCTTCGCAGGGGCCTTTTTCGCAGCGGGCTTCTTCGCCGCAGCCTTCTTGGCGGGCGCDesign primers
877262CGACCAGCGCGACCAGAGCGACCAGCGDesign primers
970637GCA-GCA-GCA-CCA-GCA-TCA-GCA-ACADesign primers
1104514CGTCCTTCTTGGCCGCTGCCTTCTTGGCGGGCGCCTTCTTGGCCGDesign primers
1167840TTCATGCGA-TCATTGCGA-TCATTGCGA-TCATTGCGA-TCATTGCGA-TCATTGCGADesign primers
1184382CCATCGCCTTCGCCACCGCCATCGDesign primers
1256074CCCCTTCCCCCTTTCCCGTTCCCCCTTTDesign primers
1262716GACGGCGATGACGGTGATGGCGGCGATDesign primers
1403707CTGGCGCTGACGCTGGCGCAGGCGDesign primers
1462438CAGCGGCGGGCGCGGCGGCAGGCGCAGCGGCAGGCGDesign primers
1499448CCG-GCG-CCA-GCG-GCG-GCG-GCG-GCGDesign primers
1568665ACCGCCGCCCCCGCCGCCAGCGCCGCCDesign primers
1584453CGCGGTGAT-CGCGGTGAT-CGCGGTCATDesign primers
1698241CGCGCCCGCGACCGCGCCTGCGCCDesign primers
1754834GCGGCTTCGGCGGCTTCAGCAGCTTCGDesign primers
1823076CCCGG-CCCGG-CCCAG-CCCGG-CCCGADesign primers
1846940GCCGCGCCGCCGCGCCGCCGCGTCDesign primers
2011914CCGCG-CCGTG-CCGCG-CCGCG-CGGCGDesign primers
2080274GCC-GCC-GCC-TCC-CCC-GCC-GCC-GCCDesign primers
2097516GGGGCGGGCGCGGCGGCGGCGGCGCGGGCGDesign primers
2170113GGCGATGGCGGCGATCGCGACGATGGCDesign primers
2369536CGGCATCGTCATAGGCATCGACATDesign primers
2432559CGGCCGCGGCGGCGGCCTTGGCCGDesign primers
2472956GCGCCAGCACCAGCACCAGCGCCGDesign primers
2517954CCGCCTCCACCTCCCCCTCCTCCTCCGCCADesign primers
2610390CGGCACCGGCAACGGCGCGGGCACDesign primers
2652933GCGGCGCGGCGGCGCTGCGGGGCGDesign primers
2725518GCG-GCG-GCT-TCG-GCG-GCG-GCG-GCG-GCG-GTG-GTG-GCG-GCT-TCC-GCA-GCG-GCG-GTG-GCG-GCGDesign primers
2725874CCCCGCGAACCGCGCGAACCCCGCGCADesign primers
2769221ATCGCCATCCCCAGCGCCATCGGCDesign primers
2816628GAAGGACGACAAGGACGATAAGGACGADesign primers
2987409CCGCCACCGCCTTCGCCACCGCCTDesign primers
3010889CAGGCGCGTCCCCGCACTTGA-GCTTCGCGTCCCCGCACTTGA-GCTTCGCGTCCCCGCACTTGADesign primers
3062939TCGCCATTCTCC-GGGCCATTCTCC-GGGCCATTCTCCDesign primers

Please help us improve this resource by reporting problems, suggestions etc.