Microsatellites /Tandem Repeats database

Genome: Acidianus hospitalis W1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
157481TCCGCC-TCCGCC-ACCGCC-TCCCCCDesign primers
207576TATGTAATTATTTAATTATTTAATDesign primers
412405AAAAAG-AAAAAG-ATAAAG-AGAAAGDesign primers
543710TAAGAGAAAAGAAGAAAAAATAAAAGAAATGAAGAGAGAADesign primers
804278TCTTCTCCTTCTTCCTCTTCTTCTDesign primers
808332TAATGATAATTATGATGATATTGADesign primers
816824TT-AT-CT-TT-TT-TT-AC-TT-TT-TT-AT-CT-CT-TT-TTDesign primers
819717TTTTTTCTTTTTATTTTGTTTTTTCDesign primers
844792AAATATTGTGGAATATTGCGAAATATAGTADesign primers
918641TATTCTATTGTATACTATTGTAGTCDesign primers
1334112TATTACTAAAATTATTGGTAAAATTATTATTAACATDesign primers
1359686TTTCGAGTTCGATTTTGATTTAGADesign primers
1399810TTTTTTTCTTCTTTTTCTTTTTTTGDesign primers
1435871AAATTGTTAAAAAATGTGAAAAATTATTTADesign primers
1486147TATATTCTAGTATATACAAGTATATCCTATDesign primers
1502923TTAGAAGTAATTAAAAATAATTAGTAGTTADesign primers
1509540AATTAAAAGT-AATTAAAAGT-AAGGAAAAGTDesign primers
1616770ATTATTATAATTATTAATATTATTDesign primers
1638087AGTAATTAGAAGTGATTAAAAGTATTTATADesign primers
1698537TTAAAACTAAAATTTAAATTAAAGDesign primers
1726737AAATTGAGGAGGAATTGAGGAAAAATTGATTAGDesign primers
1750196AGTAATAGCAATAATAATAGGAATDesign primers
1846166TAGTTATTTTTAATTACTTTTAAATATTTTDesign primers
1976947TTTTCTTCTTTTTTCAACTTTTTTCTTTTCDesign primers

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