Microsatellites /Tandem Repeats database

Genome: Treponema brennaborense DSM 12168

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
164068CAATTGAACAATCAGGCAATTGAACAATCGGGCAATTGAACAATCGGGDesign primers
228562GCAAATAGC-GCAAATAGC-GCAAATAGCDesign primers
417663ACGTACTGTTTTCACGTTCAAA-CCTTACTGTTTTCACGTTCAAA-CCTTACTGTTTTCACGTTCAAA-TCCTACTGTTTTCACGTTCAAADesign primers
417765CGCTCAAACCTTACGGCCGTGGTTCTCAAACCTTACGGCCGTGGCTCTCAAACCTTACGGCCGTGADesign primers
433605TCCGGACGGAACTGATATCGGTATGGACGGAACTGATATCGGTATGGACGGAACTGATATCGGDesign primers
445557AAATTGAACGGACACTGCAA-CGATTGAACGGACACTGCAA-CGATTGAACGGACACTGCAA-CGATTGAACGGACACTGCAA-CGATTGAACGGACACTGCAA-CGATTGAACGGACACTGCAADesign primers
484698GTGCGTTCAGCAGACAACTGCGCGTTCAGCAGACAACTGCGCGTTCAGCAGACAACTDesign primers
507113CGTGTCAGACGAGGAATCTG-CGTGTCAGACGAGGAATCTG-CGTGTCAGACGAGAAATCAG-TGTGTCAGACGAGGAATCTG-TATGTCAGACGAGGAATCTGDesign primers
507215TGTCAGACGAGAAATCAGTG-TGTCAGACGAGGAATCTGTG-TGTCAGACGAGGAATCTGTG-TGTCAGACGAGGAATCTGTGDesign primers
531947GCGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGAT-ACGCCGGTTTGCGCTGATDesign primers
680363CAAAGTCCGATAAAACCG-TAAAGTCCGATAAAACCG-TAAAGTCCGATAAAACCGDesign primers
706918TCCGCCGGGTCCGGTGTTTCCGCTGGGTCCGGTGTTTCCGCCGGGTCCGGTGTTDesign primers
925577TACTGTTTTGACGTTCAAACCT-TACTGTTTTGACGCTCAAACCT-TATTGTTTTGACGCTCAAACCT-TATTGTTTTGACGCTCAAACCT-TATTGTTTTGACGCTCAAACCTDesign primers
1248017CGTACTGTTTTCACGTTCAAACCTTACTGCTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAACDesign primers
1437448CCGCTT-CCGCTT-CCGCTT-CCGCTTDesign primers
1464455GCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1605771TTTATTCCT-TTTATTCCT-TTTATTCCTDesign primers
1613980CCGACGCGTCGTCAGCCGAAGCGTCGTCAGCCGAAGCGTCGTCAGDesign primers
1860709GATTTGCGCGTTTCCGTTAC-CGTTTGCGCGTTTCCGTTAC-CGTTTGCGCGTTTCCGTTAC-CGTTTGCGCGTTTCCGTTACDesign primers
2070881GGGCGCGGCCAGCGTTTCCGAAGGCGCAGCCAGCGTTTCCGAAGGCGCAGCCAGCGTTTCCGADesign primers
2134150TAGTCT-TAGTCT-TAGTCT-TAGTCTDesign primers
2212765AGCGTCACGGCCGTAAGGTTTGAGAGCCACGGCCGTAAGGTTTGAGAGCCACGGCCGTAAGGTTTGDesign primers
2212832GCGTCAAAACAGTAAGGTTTGA-GCGTCAAAACAGTAAGGTTTGA-GCGTCAAAACAGTAAGGTTTGA-GCGTCAAAACAGTAAGGTTTGA-GCGTCAAAACAGTAGGATTTGA-ACGTGAAAACAGTAAGGTTTGADesign primers
2370235ACGTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAACCTTACTGTTTTCACGTTCAAADesign primers
2445348CCGCAG-CCGCAG-CCGCAG-CCGCAGDesign primers
2519530TCAAGGCCTGAACGCAGCAAGGCCTGAACGCAGCAAGGCCTGAACGCATCAAAGCCTGAACGCADesign primers
2538360CAGCCGAAT-CAGCCGAAT-CAGCCGAATDesign primers
2567080CAAACCGCCGCGCACTCGGCAAACCGCCGCGCACTCAGCAAACCGCCGCGCGCTCGGCAAACCGCCGCGCACTCGGCAAACCGCCGCGCACTCAGDesign primers
2568192CAAAACGCCTCAAAACACCTCAAAACGCCGDesign primers
2724656CCGCACATT-CCGCACATT-CCGCACATT-CCGCACATTDesign primers
2901457CAAACTACCCAG-AAAACTACCCAG-AAAACTACCCAGDesign primers
3035240TTGCGCCGCTGACACAACAAACTGCACCGCTGACACAACAAACTGCACCGCTGACACAACAAADesign primers

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