Microsatellites /Tandem Repeats database

Genome: Spirochaeta sp. Buddy

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
247274TACAAAAAGTCTCCAGTGGATTA-CCGCAAAAGTCTCCAGTGGATTA-CCGCAAAAGTCTCCAGTGGATTA-CCGCAAAAGTCTCCAGTGGATTADesign primers
247369CAAAAGTGTCTCCAGTGGATTAC-CGCAAAAGTCTCCAGTGGATTAC-CGCAAAAGTCTCCAGTGGATTAC-CGCAAAAGTCTCCAGTGGATTACDesign primers
249182TTGAGAAGATTTAAGAAAATTTGAGAAGAADesign primers
546467AAAAAGTAAGAAAGTAAAAGAGTADesign primers
652727CT-GT-TT-CA-GT-TT-TT-GT-TT-CT-CT-TTDesign primers
1111619AAAAGCAA-AAAAGCAA-AAAAGAAADesign primers
1306936GTCCTCTTCCTCGCCCTCTTCCTCDesign primers
1390447CAAGGCCAAAGCAAAGGCCAAGGADesign primers
1505643AAAAAAATAAAAAAGAAGAAAAAAADesign primers
1581402ATTTAGTAATTTACTAATTTACTADesign primers
1868494TGGTGGTGGTGGTGGTTTTAGTGGCGGATCTGGTGGTGGTTTTAGTGGCGGAGCTGGTGGTGGTTTTAGTGGDesign primers
1990121TCGTGGTCATGGTCGTGATCGTGGTCGTGADesign primers
2103177CGGGAGCAGGAGCCGGAGCGGGGGDesign primers
2104151GGGGCCGGAGCCGGGGCAGGGGCCGGGGCGDesign primers
2190392AACATTTACTAATATTTATTAATAATTACTDesign primers
2199580CAGGTTCTTCCTCTACGG-CAGGTTCTTCCTCTACGG-TAGGTTCTTCCACTATGG-TAGGTTCTTCCACTACGG-CAGGTTCTTCCACTACGG-TAGGTTCTTCCACTATGG-TAGGTTCTTCCACTATGG-TAGGTTCTTCCACTATGG-TAGGTTCTTCCACTATGGDesign primers
2199743AGGTTCTTCCACTCTGGTAGGTTCTTCCACTATGGTAGGTTCTTCCACTATGGTAGGTTCTTCCACTATGGTAGGTTCTTCCACTACGGCAGGTTCTTCCTCTACGGTDesign primers
2200466TGCGGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTC-AACAGGCAGCTCTTCCTCDesign primers
2200593ACAGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCA-ACAGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCA-ACAGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCA-ACAGGCAGCTCTTCCTCAACAGGCAGTTCTTCCTCT-ACGGGCAGCTCTTCCTCTACGGGCAGCTCTTCCTCTDesign primers
2539257TGCACCTGTACTGCATCTGCACTGCACCTGCACDesign primers
2588411TCACTATTAGTTACTTTTAGTTACTATTACDesign primers
2593778GTTTGTTTTAACTTGTTTTAGGTTGTTTCADesign primers
2704672TGCTCTGCATATTTATCTGCATATTTATCTGCATATDesign primers
2747460ATCCTCATCATCATCTTCATCCTTDesign primers
3031321TTTGGGTTCTGGTTCGGATTCTGGTTCTGGTTCTGGTTTTGATTCTGGTTTTGGTTCTGADesign primers
3055145TAAAGCATCATCCAGCTCTTCTGCATCATCCAGCTCTTCTGCATCATCCAGCTCDesign primers
3055200TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCGGGCAGTTCT-TCTGTTTCGGGCAGTTCT-TCTGTTTCGGGCAGTTCT-TCTGTTTCAGACAGCTCT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGCTGT-TCTGTTTCAGGCAGCTCT-TCTGTTTCAGGCAGTTCT-TCTGTTTCGGGCAGCTCT-TCTGCTTCGGGCAGTTCT-TCTGTTTCGGGCAGTTCT-TCTGTTTCAGGCAGTTCTDesign primers
3102345TTATATAATATTATTTTATATTATTDesign primers

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