Microsatellites /Tandem Repeats database

Genome: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
50454GCCACCGAGCCCGCCGGA-CCCACCGAGCCCGCCGGA-CCCACCGAGCCCGCCGGA-CCCACCGAGCCCGCCGGADesign primers
364466CGCCC-CGCCC-CGCCC-CGCCC-CGCCCDesign primers
434762GCTGGT-GCTGGT-GCTGGT-GCTGGTDesign primers
441609GCGGGG-GCGGGG-GCGGGG-GCGGGGDesign primers
525313GGCCTCGCC-AGCCTCGCC-AGCCTCGCC-AGCCTCGCC-AGCCTCGCC-AGCCTCGCC-AGCCTCGCC-AGCCTCGCCDesign primers
621514CGGACCCGGACGAGCCCACGGACCCGGATGAGCCCACGGACCCGGATGAGCCCACGGATCCGGACGAGCCCACGGACCCGGACGAGCCCADesign primers
761779ACTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTT-GCTGCGGTTDesign primers
1052204GGTCCGAGCGGTGCTG-GGTCCGAGCGGTGCTG-GGTTCGAGCGGTGCTG-GGTTCGAGCGGTGCTG-GGTTCGAGCGGTGCTG-GGTTCGAGCGGTGCTG-GGTTCGAGCGGTGCTG-GGTTCGAGCGGTGCTGDesign primers
1315699CGACGGCCCCC-CGACGGCCCCC-CGACGGCCCGCDesign primers
1326522CGCCGCCTTCCCGGATGCCGCCTTCCCGGATGCCGCCTTCCCGGACGCCGCCTTCCCGGCDesign primers
1464992CCCGAGCCG-CCCGAGCCG-CCCGAGCCG-CCCGAGCCGDesign primers
1465494CGTCCTCCTCGTCGTCCTCGTCGTCGTCCTCGTCGTCGTCCTCGTCGTCGTCCTCGTCGTDesign primers
1465555CTCGTCGTC-CTCGTCGTC-CTCGTCGTCDesign primers
1465583TCGGTGTCC-TCGGTGTCC-TCGGTGTCCDesign primers
1486059GGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGG-TGTTGGDesign primers
1530305GAGTCGACC-GAGTCGACC-GAGTCGACCDesign primers
1586332CCGTGCAC-CCGTGCAC-CCGTGCAC-CCGTGCACDesign primers
1605147GAGCCCGGTCCC-GAGCCCGGTCCC-GAACCCGGTCCCDesign primers
1683632CCCCGCACTCGGTCCGGCCCCGGTCCGCACTCGGTCCGGCCCCGGTCCGCACTCGGTCCGGCCCCGDesign primers
1846853CCGAC-CCGAC-CCGAC-CCGAC-CCGACDesign primers
1849752ACCCACCCCGACCCAACCCACCCCGGCCCACCCCACCCCGACCCAACCCACCCCGGCCCADesign primers
1862549CCCGAG-CCCGAG-CCCGAG-CCCGAGDesign primers
2006314GGTTGAG-CGGTGAG-CGGTGAG-CGGTGAG-CGGTGAG-CGGTGAG-CGGTGAG-CGGTGAG-CGGTGAGDesign primers
2274175CCGGACCGATCCGCGCCCGTCCGCACCGGTCCGCGCCCGTCCGCACCGGTCCGCGCCCGTDesign primers
2303795GCCGTG-GCCGTG-GCCGTG-GCCGTGDesign primers
2899998GGCTCC-GGCTCC-GGCTCC-GGCTCCDesign primers
2921124CGGCGACCA-CGGCGACCA-CGGCGACCADesign primers
3046471ACGGCC-ACGGCC-ACGGCC-ACGGCCDesign primers
3231893CCGGGGTTG-CCGGGGTTG-CCGGGGTTGDesign primers
3513815TCGGGCGGGTCGGTCGGGTCCGGGTCCGGGGGGTCGGTCGGGTCCGGGTCCGGCGGGTCGGTCGGGTCCGGGDesign primers
3831201TCGCCT-TCGCCT-TCGCCT-TCGCCT-TCGCCT-TCGCCTDesign primers
3943221GGCGACCCG-GGCGACCCG-GGCGACCCG-GGCGACCCGDesign primers
4002585ACCGCA-ACCGCA-ACCGCA-ACCGCA-ACCGCADesign primers
4179450CCGCAC-CCGCAC-CCGCAC-CCGCAC-CCGCACDesign primers
4247704GGGGCCTCC-GGGGCCTCC-GGGGCCTCCDesign primers
4260894TAGCACC-CCGCACC-CCGCACC-CCGCACC-CCGCACC-CCGCACC-CCGCACC-CCGCACC-CCGCACCDesign primers
4531176GCCCACCGAGGAGCCGACCGAGGAGCCCACCGAGCADesign primers
4574992CCCCGGTCCGG-TCCCGGTCCGG-TCCCGGTCCGGDesign primers
4603717GCGCGGGCGGGCCCGGTGCGGGCGGGCCCGGTGCGGGCGGGCCCGDesign primers
4822915TCGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCTDesign primers
5084049CTCGGCCGTCGGCTGCTCGGCCGTCGACTGCTCGGCCGTCGACTGDesign primers
5099739CGCCGT-CGGCGT-CGGCGT-CGGCGT-CGGCGT-CGGCGTDesign primers
5125115GCACCA-GCACCA-GCACCA-GCACCA-GCACCADesign primers
5212130GGCGGTTCG-GGCGGTTCG-GGCGGTTCGDesign primers
5525507TCCGCGTCC-TCCGCGTCC-TCCGCGTCCDesign primers
5543785CCTCGGTCGGGTACTCGGGGACCTCGGTCGGATAGTCGGGGACCTCGGTCGGGTACTCGGGGACCTCGGTCGGATAGTCGGGGACCTCGGTCGGGTACTCGGGAADesign primers
5544738CGACCGG-CGACCGG-CGACCGG-CGACCGGDesign primers
5553080GCAGGAGGTG-ACAGGAGGTG-ACAGGAGGTGDesign primers

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