Microsatellites /Tandem Repeats database

Genome: Yersinia pseudotuberculosis PB1/+

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
95867CGGTTTCATAGAGCAC-CGGTTTCATAGAGCAC-CGGTTTCATAAAGCACDesign primers
96675ATCATCC-CTCATCC-CTCATCC-CTCATCC-CTCATCC-CTCATCCDesign primers
110791TTTTATGGGGATGATTGTTTTATGGCGATGATTGTTTTATGGCGATGATTGDesign primers
117477CTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGTDesign primers
198175GTAGTTGTATGTAATCGATAGTTGTATGTAATCGGTAGCTGTATGTAATCGDesign primers
209414ATCAC-TTCAC-TTCAC-TTCAC-TTCAC-TTCAC-TTCAC-TTCACDesign primers
211994CAGACCGA-CAGACCGA-CAGACCGA-CAGACCGADesign primers
252512ATTTTGCTGAGCACGTTGATTTTGCTGAGCACGCTGATTTTGCTGAGCACATTGDesign primers
258394TGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGADesign primers
270187GTGACGA-TTAACGA-TTAACGA-TTAACGA-TTAACGA-TTAACGA-TTAACGA-TTAACGA-TTAACGADesign primers
351211ATGAGCTATAAGTTAACCA-ATGAGCTATAAGTTAACCA-ATGACCTATAAGTTAACCADesign primers
429848ATTATA-GTTATA-GTTATA-GTTATA-GTTATA-GTTATADesign primers
434114CTCTGGTGT-CTCTGGTGT-CTCTGGTGTDesign primers
437887ATTCTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGCDesign primers
460248TTAGTGTTGTTGATCTTAAAATAAGTAGTGTTGTTGATCTTAAAATAAATAGTGTTGTTGACCTTAAAATAADesign primers
509721CCAGCTTATTGTTTAATCGGTCAGCTTATTGTTTGATCGGTCAGCTTATTGTTTAATCGGDesign primers
546065TGACGGTGG-TGACGGTGG-TGACGGTGGDesign primers
759736CTATCCAAACGGGAATAACAACAATCCAAACGGGGATAACAACAATCCAAACGGGAGTAACAADesign primers
789123ATTGTTTTTCGAAATAGATTGTTTATCGAAATAGATTGTTTTTCAAAATAGDesign primers
825332ACCTGCTC-AACTGCTC-AACTGCTC-AACTGCTC-AACTGCTC-AACTGCTC-AACTGCTC-AACTGCTCDesign primers
864213GCTACAATGGCTGACGATAAAGCTACAGCGGCTGACGATAAAGCTACAATGGCTAACGATAAAGCTACAATGGCTGACGATAAADesign primers
877675CGCTAAAACTAAAGCATCGTTAAAACTAAAGCATCGTTAAAACTAAAGCATDesign primers
883946TGCTGTAGA-TGCTGTAGA-TGCTGTAGADesign primers
913646TTACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCCDesign primers
916563CTGAATCATACAAAGTTAT-CTAAATCATACAAAGTTAT-CTAAATCATACAAAGTTAT-CTAAATCATACAAAGTTAT-CTAAATCATACAAAGTTAT-CTAAATCATACAAAGTTATDesign primers
1014506ATTGCAGGTTAATGCAGGTTAATGCAGGTTDesign primers
1021466ACGGTCCTATCAAATAACGGACCTATCAAATAGCGGTCCTATCAAATAACGGTCCTATCAAATADesign primers
1080195GTAATGTGT-GTAATGTGT-GTAATGTGTDesign primers
1101775TCAGTAGCTATACCGTAAAT-TCAGTAGCTATACCGTAAAT-TCAATGGCTATACCGTAAATDesign primers
1144613GCTATGCC-GCTATGCC-GCTATGCC-GCTATGCC-GCTATGCCDesign primers
1170177GCTACTGTTGTTAAAAAGCTACTGTTGTTAAAAGGCTACTGTTGCTAAAAADesign primers
1187307CAATTTAA-TAATTTAA-TAATTTAA-TAATTTAA-TAATTTAA-TAATTTAADesign primers
1187356AATTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAA-AGTTAAADesign primers
1223292GCGTGGTAATCGAGGTTACTGTGTGGTGATCGAGGTTACTGTGTGGTAATCGAGGTTATTDesign primers
1277863ATGTAATACGGAAAATAA-ATGTAATACGGAAAATAA-ATGTAATACGGAAAAAAADesign primers
1287637CGACTATCACCAACTATCACCGACTATCACDesign primers
1296892AACGTGACCTGTCTTAACGTGACTTGTCTTAACGTAACCTGTCTTAACGTAACCTGTCTTDesign primers
1349910TATAGTAATATATGTTT-AATAGTAATATATGTTT-AATAGTAATATATGTTT-AATAGTAATATATGTTTDesign primers
1410489TAGTTAATCTACCCGAGTA-TAGTTAATCTACCCGAGTA-TGGTTAATCTACCCGAGTA-TGGTTAATCTACCCGAGTADesign primers
1447184TGGAAG-TGGAAG-TGGAAG-TGGAAGDesign primers
1461451GTCGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTA-ATAGTTADesign primers
1470023AGAATTG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATGDesign primers
1470150GCAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGA-ACAATGADesign primers
1516883CTGTGTGCAGATGTA-CTGTGTGCAGATGTA-ATGTGTGCAGATGTA-CTGTGTACAGATGTADesign primers
1516944TGTGTACAGATCGAT-TGTGTACAGATCGAT-TGTGTACAGATCAATDesign primers
1548724CTTGTAATGAGATTG-TTTGTAATGAGATTG-TTTGTAATGAGATTG-TTTGTAATGAGATTGDesign primers
1550961TGTAGTTAACGTGAGTCA-TGTAGTTAACGTGAGTCA-TGTCGTTAACGTGAGTCADesign primers
1569222GATGAATAGGCTTGTATTGATAAATAGGCTTGTATTGATAAATAGGCTTGTATTDesign primers
1576909AGAGCAAA-AGAGCAAA-AGAGCAAADesign primers
1598257AAAGAGAGTTGGATTGAAGT-AAAAATAGTTGGATTGAAGT-AAAAATAGTTGGATTGAAGT-AAAAATAGTTGGATTGAAGTDesign primers
1620302GAATGAGCGTGCCAGAATGAACGTGCCAGAATGAGCGTGCCAGAATGAGCGTGCCADesign primers
1675799ATTGGTTA-ATTGGTTA-ATTGGTTA-ATTGGTTA-ATTGGTTADesign primers
1696338CCCATAAACATGCG-TCCATAAACATGCG-TCCATAAACATGCGDesign primers
1701964CATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTG-TATTTCCTGDesign primers
1707040AAATTGGCATTTACGAATAAATTGGCATTTACAAATAAATTGGCATTTACGAATDesign primers
1728304TGGATAGTC-GGGATAGTC-GGGATAGTC-GGGATAGTC-GGGATAGTC-GGGATAGTCDesign primers
1840735ATTATTTTCTAGTTATCCAAGTATTTTCTAGTTATCCAAGTATTTTCTAGTTATCCADesign primers
1955442CGTTATGCAGTTAATAAAAACGATATGCAGTTAATAAAAGCAATATGCAGTTAATAAAAACAATATGCAGTTAATAAAAADesign primers
2000339ACTATTAGCTATTAACCATAACTATTAGCTATTAACCATGACTCTCAGCTATTAACCATADesign primers
2062763ATAATTACCCTGGCACACAATTACCCTGGCACACAATTACCCTGGCACDesign primers
2062827ACGATTACCTTGACACACAATTACCTTGACACACAATTACCTTGACACDesign primers
2079592ATAAACATATCGATTTATAAACATGTCGATTTATAAACATATCGATTTDesign primers
2138400ACCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGT-GCCTGATGTDesign primers
2222504AATCAA-CATCAA-CATCAA-CATCAA-CATCAA-CATCAADesign primers
2239906GTTCATAAATAGATGGCTCATAAATAGATGGCTCATAAATAGATGDesign primers
2240889GTGTAG-GTGTAG-GTGTAG-GTGTAGDesign primers
2296990CACAATT-CATAATT-CATAATT-CATAATT-CATAATT-CATAATT-CATAATT-CATAATTDesign primers
2302943ACTAATCA-ACTAATCA-ACTAATCA-ACTAATCA-ACTAATCADesign primers
2318147AGATTTACCAAAACATTAGGTTTACCAAAACATTAGGTTTACCAAAACATTDesign primers
2380066AGATTGTAGTGTGAT-GGATTGTAGTGTGAT-GGATTGTAGTGTGAT-GGATTGTAGTGTGATDesign primers
2397698ATGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGA-CAGGTGADesign primers
2408972GCGGATA-GCGGATA-GCGGATA-GCGGATA-GCGGATADesign primers
2455251ATTAACG-ACTAACG-ACTAACG-ACTAACG-ACTAACG-ACTAACGDesign primers
2467383TTTAACCAAAACAAGTCCACCTTAACTAAAACAAGTCCACCTTAACTAAAACAAGTCCACDesign primers
2534651GTTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCA-CCTATCADesign primers
2562419GCGACA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCA-GCACCADesign primers
2601812CCAAAG-CCAAAG-CCAAAG-CCAAAGDesign primers
2654959CTTGTTATGAACCAATTA-ATTGTTATGAACCAATTA-ATTGTTATGAACCAATTADesign primers
2655014GTGTTATGAACCAATTAA-GTGTTATGAACCAATTAA-GTGTTATGAACCAATTAA-GTGTTATGAGCCAATTAADesign primers
2657624CGATTAGTTATTACATCGTCGATTAGTTATTACATCGCCGATTAGTTATTACACCGTCGATTAGTTATTACACCGTCGATTAGTTATTACATCGCDesign primers
2673869ATAACGCTCTTTATTGCTAAAACGCTCTTTATTGCTAAAACGCTCTTTATTGCTDesign primers
2715726AACAAGTATTAATCATA-AACAAGCATTAATCATA-AACAAGCATTAATCATA-AACAAGCATTAATCATA-AACAAGCATTAATCATADesign primers
2736842CGGTGTTGTTATGGC-GGGTGTTGTTATGGC-GGGTGTTGTTATGGCDesign primers
2810523CAGCAAGT-AAGCAAGT-AAGCAAGT-AAGCAAGT-AAGCAAGT-AAGCAAGTDesign primers
2841943CCGCGATAACACCAACCGTGATAACACCAACCGTGATAACACCAADesign primers
2855835GGTGTTC-TGTGTTC-TGTGTTC-TGTGTTC-TGTGTTC-TGTGTTC-TGTGTTC-TGTGTTCDesign primers
2857954TTACTAACATTGATCAGTTACTAACATTGACCAGTTACTAACATTGACCAGDesign primers
2952445CTGTTGATATGGTTACTGCTGATATGGTTACTGTTGATATGGTTADesign primers
2962621TACAGAT-GACAGAT-GACAGAT-GACAGAT-GACAGAT-GACAGATDesign primers
2981215CCG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAGDesign primers
2988550GCTTTAGACTGCTTTAAACTGCTTTAAACTDesign primers
2988602AGAAATAG-AGAAATAG-AGAAATAG-AGAAATAG-AGAAATAGDesign primers
3004190CAATGAGGG-CAATGAGGG-CAATGAGGG-CAATGAGGG-CAATGAGGGDesign primers
3030503GTCAATAA-GTCAATAA-GTCAATAA-GTCAATAADesign primers
3031652TCACAAAACAGGTCA-ACACAAAACAGGTCA-ACACAAAACAGGTCA-ACACAAAACAGGTCADesign primers
3043367GGTGCTTGTTGTAATGGTGCTTGATGTAATGGTGCTTGATGTAATDesign primers
3053682GGCGGTGCCGTGGTTTCCGGCGGTGCCGTTGTTTCCGGCGGTGCCGTTGTTTCCDesign primers
3053737GCGGTGCCGTTGTCTCTG-GCGGTGCCGTTGTCTCTG-GCGGTGCCGTTGTCTCTGDesign primers
3053808GGCGGTGCCGTTGTCTCT-GGCGGTGCCGTTGTTTCT-GGCGGTGCCGTTGTTTCT-GGCGGTGCCGTTGTTTCTDesign primers
3053934GGCGGTGCCGTGGTTTCCGGCGGTGCCGTTGTTTCCGGCGGTGCCGTGGTTTCCGGCGGTGCCGTTGTTTCCGGCGGTGCCGTTGTTTCCDesign primers
3054060GGCGGTGCCGTTGTCTCT-GGCGGTGCCGTTGTCTCT-GGCGGTGCCGTTGTTTCTDesign primers
3054276GGCGGTGCCGTTGTTTCCGGCGGTGCCGTGGTTTCCGGCGGTGCCGTTGTTTCCDesign primers
3105269GATAGAGTTGCATTTTGGTGATAGAGTTGCATTTTAGTGATAGAGCTGCATTTTGGTDesign primers
3129061TCCACTCACTACACCTTA-TTCACTCACTACACCTTA-TTCACTCACTACACCTTA-TTCACTCACTACACCTTADesign primers
3215642GACTTATTTTAAGGTCAATAACTTATTTTAAGGTCAATGACTTATTTTAAGGTCAATDesign primers
3239976GTGAAGT-TTGAAGT-TTGAAGT-TTGAAGT-TTGAAGT-TTGAAGTDesign primers
3267247AAGTAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTG-ACGCAGTGDesign primers
3268707TTGGGTATATAACTATTTATATTTAGGTATATAACCATTTATATTTAGGTATATAACTATTTATATDesign primers
3296078TATTAGCTGTTGACCTGCTATTAACTGTTGACCTGCTATTAGCTGTTCACCTGCDesign primers
3315773TCAGTTGGTTTGGTGTCTGTTGGTTTGGTGTCTGTTGGTTTGGTGDesign primers
3344790GAGGACAATATTATT-TAGGACAATATTATT-TAGGACAATATTATTDesign primers
3359425ACCACA-GCCACA-GCCACA-GCCACA-GCCACA-GCCACADesign primers
3367975GAAGGCAGA-GAAGGCAGA-GAAGGCAGA-GAAGGCAGADesign primers
3396925GATAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGT-TGTAGGTDesign primers
3397010GTAGGTG-GTAGGTG-GTAGGTG-GTAGGTG-GTAGGTG-GTAGGTG-GTAGGTGDesign primers
3397749ACCTATAATATCATCGGTTACCCTACAATATCATCGGTTACCCTACAATATCATCGGTTADesign primers
3500217TGCTTTATATCTCGCTGATACTTTATATCTCGCTGATGCTTTATATCTCACTGADesign primers
3564561CTTTATGGTTCAACTTGTTTATGGTTCAACTTATTTATGGTTCAACTTDesign primers
3567576CTTTAAAACCAAATTGCTTTAAAGCCAAATTGCTTTAAAGCCAAATTGDesign primers
3646768AAATATGTGTCTGTATT-AAATATGTGTCTGTATT-AAACATGTGTCTGTATTDesign primers
3712413GTAAATAGTGGTTAATAGGCAAATAGTGGTTAATAGGCAAATAGTGGTTAATAGDesign primers
3715972TGTTACTGAAGAGGGTAATGTTACTGCAGAGGGTAATGTTACTGCAGAGGGTAADesign primers
3730870AAAAATGATT-GAAAATGATT-GAAAATGATT-GAAAATGATT-GAAAATGATTDesign primers
3731325TCACTTTCC-TCACTTTCC-TCACTTTCC-TCACTTTCCDesign primers
3754034AAAAAGACAATAAAAATACAATAAAAACACAATDesign primers
3764841CGCTTACGACAATATCCGTTTACGACAATATCCGTTTACGACAATATCDesign primers
3773136CCGTAGTT-CCGTAGTT-CCGTAGTT-CCGTAGTTDesign primers
3797364TCGCGTTCAAA-TCGGGTTCAAA-TCGGGTTCAAA-TCGGGTTCAAADesign primers
3814508ACTGTCAATACACTCAAC-ACTGTCAATACGCTCAAC-ACTGTCAATACGCTCAAC-ACTGTCAATACGCTCAACDesign primers
3858098TGGTGCTCGGT-TCGTGCTCGGT-TCGTGCTCGGT-TCGTGCTCGGT-TCGTGCTCGGTDesign primers
3859869ATAAAA-GTAAAA-GTAAAA-GTAAAA-GTAAAA-GTAAAADesign primers
3859906TAAAAG-TAAAGG-TAAAGG-TAAAGG-TAAAGG-TAAAGG-TAAAGG-TAAAGG-TAAAGG-TAAAGGDesign primers
3861245CGGATGA-CGGATGA-CGGATGA-CGGATGA-CGGATGADesign primers
3884177ATTTGTGGTGACGACATTATTTGTGGTGACGACATCATTTGGGGTGACGACATTDesign primers
3885406AGCTAAGTTTGAGACAGTA-AGCTAAGTTTGAGACAGTA-AGCTAAGTTTGAGGCAGTA-AGCTAAGTTTGAGGCAGTA-AGCTAAGTTTGAGACGGTA-AGCTAAGTTTGAGGCAGTADesign primers
3893724GTTTCAATTTATCAACATAG-GTTTTAACTTATCAACATAG-GTTTTAACTTATCAACATAG-GTTTTAATTTATCAACATAGDesign primers
3900290AAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTADesign primers
3910158GCTACATC-TCCACATC-TCCACATC-TCCACATC-TCCACATC-TCCACATC-TCCACATC-TCCACATC-TCCACATCDesign primers
3934537TGCAGAAGTACTTTGGTTTGCAGACGTACTTTGGTTTGCAGAAGTACTTTGATTDesign primers
4075849ACCTGAGCA-AACTGAGCA-AACTGAGCA-AACTGAGCA-AACTGAGCA-AACTGAGCADesign primers
4145993GATGCAGA-GATGCAGA-GATGCAGADesign primers
4146033AAAAGGTAAT-AAAGGGTAAT-AAAGGGTAAT-AAAGGGTAAT-AAAGGGTAATDesign primers
4202768CTGATACATAACGTCTGATACATAACGCCTGACACATAACGTDesign primers
4223642ATCTACCATTACAAAC-ATCCACCATTACAAAC-ATCCACCATTACAAAC-ATCCACCATTACAAACDesign primers
4264611GAGCTATTATTTTTGATGAAGAGCTATTACTTTTGATGAAGAGCCATTATTTTTGATTAADesign primers
4419369TCAAAA-TCAAAA-TCAAAA-TCAAAADesign primers
4501950CTAACCTGGCTTTTATCTTACTAACCTGACTTTTATCTTACTAGCCTAGCTTTTATCTTAATAGCCTGGCTTTTATCTTAATAGCCTGGCTTTTATCTTADesign primers
4515350CCGTCT-CTGTCT-CTGTCT-CTGTCT-CTGTCT-CTGTCTDesign primers
4546051GAAAAACAG-GAAAAACAG-GAAAAACAG-GAAAAACAGDesign primers
4548175CAACCAATTAACCACCAATTAACCACCAATTAADesign primers
4563109TCCTATACACATTGCTATACACATTGCTATACACATDesign primers
4567948ATCCAGCTT-ATTCAGCTT-ATTCAGCTT-ATTCAGCTT-ATTCAGCTT-ATTCAGCTT-ATTCAGCTT-ATTCAGCTTDesign primers
4617816CATCGGTGTCGCTTGTGAT-AATCGGTGTCGCTTGTGAT-AATCGGTGTCGCTTGTGATDesign primers
4653835ATAGTGTGGATGATGATAATAGTGTGAATGATGATAATAGTGTGAATGATGATADesign primers

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