Microsatellites /Tandem Repeats database

Genome: Burkholderia vietnamiensis G4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
146479CACGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAGDesign primers
146522ACGACC-ACGACC-ACGACC-ACGACC-ACGACCDesign primers
148837CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACA-CGGCTCACADesign primers
149272CCGGCAGA-CCGGCAGA-CCGGCAGA-CCGGCAGA-CCGGCAGA-CCGGCAGADesign primers
162535TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACCDesign primers
162572TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACC-TCCAGCCGTACCDesign primers
176186CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGA-CGGCAGADesign primers
176276GCGGCAA-GCGGCAA-GCGGCAA-GCGGCAA-GCGGCAADesign primers
252632GCCGCCTCA-GCCGCCTCA-GCCGCCTCA-GCCGCCTCADesign primers
252683TCAGCC-TCAGCC-TCAGCC-TCAGCC-TCAGCC-TCAGCCDesign primers
292601ATCCGCA-ATCCGCA-ATCCGCA-ATCCGCADesign primers
435236AAGCTGCACTGAG-AAGCTGCACTGAG-AAGCTGCACTGAG-AAGCTGCACTGAGDesign primers
546770CGATCTCCGAC-CGATCTCCGAC-CGATCTCCGACDesign primers
692664GGCCGAGTGC-GGCCGAGTGC-GGCCGAGTGC-GGCCGAGTGCDesign primers
693810CGACAGC-CGACAGC-CGACAGC-CGACAGC-CGACAGC-CGACAGC-CGACAGC-CGACAGCDesign primers
693900CCGACCG-CCGACCG-CCGACCG-CCGACCG-CCGACCGDesign primers
693957CCAAGCGC-CCAAGCGC-CCAAGCGC-CCAAGCGCDesign primers
693990CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCC-CAAGTGCCDesign primers
722180CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAG-CCGAACGAGDesign primers
722271CGAACGCAC-CGAACGCAC-CGAACGCAC-CGAACGCACDesign primers
722315CCGAATGCA-CCGAATGCA-CCGAATGCA-CCGAATGCA-CCGAATGCADesign primers
725990CGATCAAC-CGATCAAC-CGATCAAC-CGATCAACDesign primers
737304CGACACGAA-CGACACGAA-CGACACGAA-CGACACGAA-CGACACGAA-CGACACGAA-CGACACGAADesign primers
760965CTGAACCGGC-CTGAACCGGC-CTGAACCGGCDesign primers
793260CAAGCACCT-CAAGCACCT-CAAGCACCTDesign primers
793315AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCG-AAGCACCCGDesign primers
803087GGACGAAGT-GGACGAAGT-GGACGAAGT-GGACGAAGTDesign primers
844373GCCCGAGA-GCCCGAGA-GCCCGAGA-GCCCGAGADesign primers
844406CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAGDesign primers
1315563GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
1330788CGGCCCGTATC-CGGCCCGTATC-CGGCCCGTATC-CGGCCCGTATC-CGGCCCGTATC-CGGCCCGTATC-CGGCCCGTATCDesign primers
1342307CGCGGCAACC-CGCGGCAACC-CGCGGCAACCDesign primers
1345476CCGACACGA-CCGACACGA-CCGACACGA-CCGACACGADesign primers
1367206GCGTTCG-GCGTTCG-GCGTTCG-GCGTTCGDesign primers
1473339AGCCCC-AGCCCC-AGCCCC-AGCCCCDesign primers
1473464CCGCGCCAGCCCCCA-CCGCGCCAGCCCCCA-CCGCGCCAGCCCCCADesign primers
1496250ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCA-ACCGACGACCADesign primers
1496386ACCACCAGCCA-ACCACCAGCCA-ACCACCAGCCADesign primers
1623227GCCGCTCGTGCCACCCGT-GCCGCTCGTGCCACCCGT-GCCGCTCGTGCCACCCGTDesign primers
1728151GCGGTAGGCACG-GCGGTAGGCACG-GCGGTAGGCACGDesign primers
1908999CGATGCCGTGGATTGGTC-CGATGCCGTGGATTGGTC-CGATGCCGTGGATTGGTCDesign primers
2134912CGTACGGT-CGTACGGT-CGTACGGT-CGTACGGTDesign primers
2324991CCACGT-CCACGT-CCACGT-CCACGTDesign primers
2628949GGTGTCGTC-GGTGTCGTC-GGTGTCGTC-GGTGTCGTCDesign primers
2628986GTGCCGCTG-GTGCCGCTG-GTGCCGCTGDesign primers
2634129ATCTCTTCA-ATCTCTTCA-ATCTCTTCADesign primers
2669306GGGGCTCG-GGGGCTCG-GGGGCTCG-GGGGCTCG-GGGGCTCGDesign primers
2669347GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGGDesign primers
2784654GGTGCTT-GGTGCTT-GGTGCTT-GGTGCTT-GGTGCTT-GGTGCTTDesign primers
2943779CGCCTCGCC-CGCCTCGCC-CGCCTCGCC-CGCCTCGCCDesign primers
2943826CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCG-CCTCGTCCGDesign primers
2947467CCTCGCTGGTTGGA-CCTCGCTGGTTGGA-CCTCGCTGGTTGGADesign primers
2947510CTCGCTGGTCGGGC-CTCGCTGGTCGGGC-CTCGCTGGTCGGGCDesign primers
2990019CTGATTCGCCGC-CTGATTCGCCGC-CTGATTCGCCGCDesign primers
3046518GAGGCCGCA-GAGGCCGCA-GAGGCCGCADesign primers
3083493CGGCTGGT-CGGCTGGT-CGGCTGGTDesign primers
3099067CGGGCCT-CGGGCCT-CGGGCCT-CGGGCCTDesign primers
3119496CACCGCCT-CACCGCCT-CACCGCCT-CACCGCCTDesign primers
3162341GGCGTTG-GGCGTTG-GGCGTTG-GGCGTTG-GGCGTTG-GGCGTTG-GGCGTTGDesign primers
3162391GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGG-GCGTTCGGDesign primers
3162464CGGTTCGGG-CGGTTCGGG-CGGTTCGGGDesign primers
3248114GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGADesign primers
3284874TCTTCGCTGTCCTTCGC-TCTTCGCTGTCCTTCGC-TCTTCGCTGTCCTTCGCDesign primers
3285506GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCTDesign primers
3299654GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGT-GTGCCGTDesign primers
3312018GTCGATCC-GTCGATCC-GTCGATCC-GTCGATCC-GTCGATCC-GTCGATCC-GTCGATCCDesign primers
3312075TCGAGCCA-TCGAGCCA-TCGAGCCA-TCGAGCCADesign primers
3312120CTGTACGG-CTGTACGG-CTGTACGGDesign primers
3341854CGCGCAT-CGCGCAT-CGCGCAT-CGCGCAT-CGCGCAT-CGCGCAT-CGCGCAT-CGCGCAT-CGCGCATDesign primers
3341918TCGCATC-TCGCATC-TCGCATC-TCGCATC-TCGCATC-TCGCATCDesign primers
3342026CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCADesign primers
3342097GCTCCAC-GCTCCAC-GCTCCAC-GCTCCACDesign primers
3342143CACGCTT-CACGCTT-CACGCTT-CACGCTT-CACGCTT-CACGCTT-CACGCTT-CACGCTTDesign primers
3370719GCTCTGCCT-GCTCTGCCT-GCTCTGCCTDesign primers
3430404GGCGTTGGT-GGCGTTGGT-GGCGTTGGT-GGCGTTGGT-GGCGTTGGT-GGCGTTGGT-GGCGTTGGT-GGCGTTGGTDesign primers

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