Microsatellites /Tandem Repeats database

Genome: Pseudomonas syringae pv. syringae B728a

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
178550TGCCACGCC-TGCCACGCC-TGCCACGCCDesign primers
575835AGCAGG-GGCAGG-GGCAGG-GGCAGG-GGCAGG-GGCAGGDesign primers
608321AAGGCTT-GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTTDesign primers
838605GCGAAC-GCGAAC-GCGAAC-GCGAACDesign primers
1314323GGATGTCC-GGATGTCC-GGATGTCCDesign primers
1801518AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCADesign primers
1866152GAGCCT-GAGCCT-GAGCCT-GAGCCTDesign primers
2288622GGAGCTG-GGAGCTG-GGAGCTG-GGAGCTGDesign primers
2288651GAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTACDesign primers
2288742TGCTTGC-AGCTTGC-AGCTTGC-AGCTTGC-AGCTTGC-AGCTTGC-AGCTTGC-AGCTTGCDesign primers
2314955AAAGCTT-GTAGCTT-GTAGCTT-GTAGCTT-GTAGCTT-GTAGCTT-GTAGCTT-GTAGCTT-GTAGCTTDesign primers
2423174GACAAGC-TACAAGC-TACAAGC-TACAAGC-TACAAGC-TACAAGCDesign primers
2423236CTTGAAG-CTTGAAG-CTTGAAG-CTTGAAGDesign primers
2694639TCGTAA-CCGTAA-CCGTAA-CCGTAA-CCGTAA-CCGTAADesign primers
3227072TTG-TTG-TTC-TTG-TTC-TTG-TTC-TTG-TTC-TTG-TTC-TTGDesign primers
3409753ATCAGACAATCAGCCAATCAGACAATCAGACAATCAGCCAATCAGCCAATCAGCCAATCAGCCADesign primers
3632759TGGT-CGGT-CGGT-CGGT-CGGT-CGGT-CGGT-CGGT-CGGTDesign primers
3685148CTCATCAGC-CTCATCAGC-CTCATCAGC-CTCATCAGCDesign primers
4255791AGCCGCA-AGCCGCA-AGCCGCA-AGCCGCADesign primers
4255820GCTTGAA-GCTTGAA-GCTTGAA-GCTTGAADesign primers
4910923TAAGCTG-CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTGDesign primers
5055503AGCTGGA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACADesign primers
5063287CTGTCAGTT-CTGTCAGTT-CTGTCAGTT-CTGTCAGTTDesign primers
5269325CAGCTTC-AAGCTTC-AAGCTTC-AAGCTTC-AAGCTTC-AAGCTTCDesign primers
5302381AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCADesign primers
5378875CA-CA-AA-CA-CA-AA-CA-CA-AA-CA-CA-AADesign primers
5433215GCTACAA-GCTGCAA-GCTGCAA-GCTGCAA-GCTGCAA-GCTGCAA-GCTGCAA-GCTGCAA-GCTACAA-GCTACAA-GCTACAA-GCTACAA-GCTACAA-GCTACAADesign primers
5469620AGCTGCA-AGCTGCA-AGCTGCA-AGCTGCADesign primers
5469649GCAGAA-GCAGAA-GCAGAA-GCAGAADesign primers
5627453CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCTDesign primers
5782526GCGGAC-GCGGAC-GCGGAC-GCGGACDesign primers
5840950CTTCCGGGGTGACTTCCGGGGTGGCTTCCGGGGCGACTTCCGGGGTAADesign primers

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