Microsatellites /Tandem Repeats database

Genome: Listeria innocua Clip11262

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
85277GCTAACAAACAGCTAACAAACGACTCACAAACAGCTAACAAACAGCTAACAACTADesign primers
118045AAACAA-AAACAA-ATACAA-ATACAA-ADesign primers
332144ATTGATAAAATTGAAAAAATTGTTAAAADesign primers
583280GATCCAGATCCAACTGACCCAGATCCAGTTGTTCCAAATCCAACTGATCCADesign primers
691289TTAACTAATCTAACTAATTTAACCAATDesign primers
867451GGATGAAGATGAGGATGAGGACGADesign primers
980447AAAAAGAAGAAGAAAACGAAACAGADesign primers
1124250CTCCGGTAGACCCAGTAGACCCGGTAGATCCAGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCGGTAGACCCAATAGDesign primers
1256021TAAAG-GAAAG-GAAAG-TAAAG-TAAAT-GAAAG-TAAAGDesign primers
1324732CGCCAGCACCAGATCCAACGCCGACACCGGATCCAACACCGTCACCAGATCCAACDesign primers
1325765TTTTTC-TTTTTC-TTTCTC-TTTCTC-TTDesign primers
1429526TTTATTGTTTTTATTCTTTTCATTGTTTDesign primers
1440774AAAAACAAAAAGAACAACAAAAATDesign primers
1660344TTGTTTTTGTGTTTGTTTTTGTGTTTGDesign primers
1713154GATATGATACTATATGACATTATATGADesign primers
1752748TGCTTTACTTTCATTTACTTTACTTTCCTTTCCTTTAGTTTGDesign primers
1924233ATCAGCGTCAGCATCGGCATCTGCATCGGCGTCAGCATCGGCATCTGCATCGGCDesign primers
1924288TCGGCGTCAGCATCTGCGTCAGCATCGGCATCAGCGTCDesign primers
1924688CGTCGGCATCGGCATCAGCGTCGGCATCGGCATCGGCATCGGCATCTGCATCCGCGTCCGCATCGGCGTCAGCDesign primers
1924782GGCATCTGCATC-GGCATCTGCATC-GGCATCAGCGTC-GGCATCAGCGTC-GGCATCCGCATC-TGCATCCGCATCDesign primers
1924855GCGTCAGCATCCGCATCAGCGTCGGCGTCAGCGTCGGCATCTGCATCGGCATCTGCATCGGCATCAGCGTCGGCGTCAGCATCCGCATCAGCGTCGGCDesign primers
1924995ATCAGC-ATCAGC-GTCGGC-ATCCGC-ATCAGC-GTCGGC-ATCCGC-ATCCGC-ATCGGC-ATCGGC-GTCAGC-ATCGGC-ATCDesign primers
1925091ATCCGCATCAGCGTCGGCGTCAGCATCCGCATCCGCATCGGCATCCGCATCAGCGTCAGCATCGGCATCAGCDesign primers
1925164TCAGCATCCGCATCCGCATCCGCATCCGCATCAGCGTCDesign primers
1925209GCATCAGCGTCAGCATCCGCATCAGCDesign primers
1925236TCGGCATCAGCATCCGCATCCGCATCTGCATCGGCGTCGGCATCDesign primers
1925281GCGTCA-GCATCG-GCATCG-GCGTCA-GCATCC-GCATCC-GCATCC-GCATCC-GCATCG-GCGTCG-GCATCC-GCATCT-GCDesign primers
1925404TCAGCATCCGCA-TCGGCATCCGCA-TCGGCATCTGCA-TCDesign primers
1925466GGCATCAGCATCCGCATCTGCATCGGCATCCGCATCCGCATCTGCATCGGCGTCAGCATCGGCGTCAGCGTCGGCATCAGCATCDesign primers
1925551GCATCGGCGTCAGCATCCGCATCGGCGTCAGCATCCGCATCCGCATCGGCGTCAGCGTCAGCATCGGCATCCGCATCGGCGTCAGCGTCAGCGTCAGCATCGGCDesign primers
1925671GCATCG-GCGTCG-GCATCC-GCATCC-GCATCA-GCDesign primers
1925704TCAGCA-TCCGCA-TCGGCG-TCGGCA-TCTGCG-TCGGCG-TCAGCA-TCCGCA-TCCGCA-TCDesign primers
1925761GCGTCGGCATCCGCATCCGCATCCGCATCCGCATCGGCGTCAGCATCCGCATCCGCATCGGCGTCAGCATCCGCATCCGCATCCGCATCGGCATCCGCATCCGCATCAGCGTCGGCGTCGGCATCAGCGTCGGCATCAGCATCCGCDesign primers
2021011AGAAGAAGCGAAGAAAAAAGCCGAAGAAGATAAGAAAAAAACAGAAGAAGAGAAAAAGAAAGAAGAAGAAGCTAAGAAAAAAGCAGADesign primers
2070416AGCAGCTTTGTCTGCAGCGGCCTTCTCTGCGGCAGCTTTTTCTTCDesign primers
2081228CAATGAAGCCCAATTAAGTCAAATGAAGCACDesign primers
2152056TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2391893CAGAATCAAAATCATAATCAGAAGDesign primers
2436174AATTCTTTAATTCTTAAGTTCTTTAATTCTTGDesign primers
2438854AAATTA-AAATTA-GAATTA-AAATCA-AADesign primers
2710888TAAAACAAAAAAACAATAAAACTADesign primers
2725695TCTTCA-TCTTCA-TCGTCA-TCATCA-TCTDesign primers
2741361ATCGGATTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTACTGGGTTTATCGGATTTACCGGGTTTADesign primers
2822278TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers

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