Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Typhimurium str. U288

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
68194TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
197422GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATDesign primers
244491CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
352694GCGGCAGCCGCATCGGCAGCCGCADesign primers
352925GCGGCAGCCGCATCGGCAGCCGCADesign primers
377016GGAGCCGGAGCTGGTGCCGGAGCTDesign primers
451204ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
1173032GAAAATTTCGGAAATTTCGGAAATTTCDesign primers
1267949TACGGCAGCGGC-GTCGGCAGCGGC-GTCGGCAGCGGCDesign primers
1544324TGAACGGGGAAGCAACGGGGAATAATCGGGGAADesign primers
1545450TTTGATGTA-GTTGATGTA-GTTGATGTADesign primers
1564932GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
1785669ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
1943591TCAATA-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGGDesign primers
1948963GCTGCGGCTGCCGATGCGGCTGCCDesign primers
1949193CGCTGCGGCTGCCGATGCGGCTGCDesign primers
1971812GGTTTT-GGTTGT-GGTTGT-GGTTGTDesign primers
2176896TTCGCGCCAGTTCGCGGCATCGCGCGCCAGDesign primers
2281477ATATAAAAAACATATAACTAACATTTAAGAAACDesign primers
2601317GCGCTGGATGCGCTCGATGCGCTGAATDesign primers
2713165GAGCCAACCTGTACGGTGCCGACCTGTACGGTGCCAACCTGCGCGDesign primers
2713211TGCCGACCTGCGCGATGCCGACCTGTGCGGTGCCGACCTGTACGGTGCCAACCTGCGCGGDesign primers
2713272GCCAACCTGTACGGT-GCCAACCTGTACGGT-GCCAACCTGTGCGGT-GCCAACCTGCGCGGT-GCCAACCTGTACGGT-GCCAACCTGCGCGGT-GCCAACCTGTACGGT-GCCGACCTGTACGGT-GCCAACCTGCGCGGTDesign primers
2713408CCGACCTGCGCGATGCCGACCTGTGCGGTGCCGACCTGCGCGATGCCGACCTGCCTGATCDesign primers
2883691TTGTACCACTTGTCCCACCTGTACCACDesign primers
3047847TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
3075369CTCTCG-GTCTCG-GTCTCG-GTCTCGDesign primers
3132968GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3182121AAACCA-CCATCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCADesign primers
3244285GCGTCGTTT-GCGATGTCT-GCGATGTCT-GCGATGTCT-GCGATGTCT-GCGATGTCTDesign primers
3468119TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3468886TCGCCGCCGTCGCCGCCATCACCGCCGDesign primers
3717339ATGCAGACGCAGATGCAAACGCAGDesign primers
3807670CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
4011315GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
4085781TGATCATGTTCACGATCATGACCADesign primers
4130225CTGGCGCTGGTGCCGGCGCTGGTGDesign primers
4245138TCATTATAATTAACATTATCAATADesign primers
4334282CGCGGTAAATCTCGATAAATGGCGGTAAAADesign primers
4852515CACCACCACCATTACCACCATCACDesign primers

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