Microsatellites /Tandem Repeats database

Genome: Rickettsia typhi str. TH1527

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
49747TAAAATTAAAAATATAATTCAAATDesign primers
68256CCA-CCA-CCT-CCA-CCA-CCA-CCT-CCADesign primers
227238ATAAATATTAATAAATATAAATAATTATAADesign primers
311733AAAATTTTAAAATTATAAAAATTTDesign primers
382177TTGTTTTATTGTGTTCTGTTTTGTADesign primers
426852ATATTAATATTTGTATTAATATTCATAGTADesign primers
451605TTAGTA-TTAGTA-TCAGTA-TTAGAADesign primers
455956AAAATGAATGAAATGAATAAAATAAATDesign primers
534129AAATCAAAAATAATCAACAACAATGAAAAADesign primers
615428TATATTAATTATAATAATTTTATTAATDesign primers
637616GTATATATGTATATAAATATATATDesign primers
680568TAAAT-TAATT-TAAAT-TAAAA-TACATDesign primers
685817AAATGATAATAATTGATATTAAAAAATAATDesign primers
794701AAAAAGAAAAAAATAATAAAAAATADesign primers
795156AACAATAAAA-TCCAATAAAA-TCCAATAAAADesign primers
806459CCATACCAC-CCATACCAC-CCATGCCACDesign primers
849462AATTATTAAATGATTAAACTATTADesign primers
940677ATTTTATCTTATTTGATTTAAATTTDesign primers
992099AAAACTAAATAATAATAAATTAAACGAAATDesign primers
1054432TATAAAGTATTCTAAACTATTATAAGATATDesign primers
1070704AAAATTAATTAAATTAATAAAATTTATDesign primers

Please help us improve this resource by reporting problems, suggestions etc.