Microsatellites /Tandem Repeats database

Genome: Burkholderia gladioli BSR3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
116021CCGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACCDesign primers
148192CGAGCAGCAAGACAAGCAGCAAGACGAGCAACAAGADesign primers
157302CGAGCTGGT-CGAGCTGGT-CGAGCTGGT-CGAGCTGGTDesign primers
228720AATCCGGCCGC-GATCCGGCCGC-GATCCGGCCGC-GATCCGGCCGCDesign primers
390245CGGAAGCGA-CGGAAGCGA-CGGAAGCGADesign primers
390273GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGACDesign primers
1410175TTGCCA-TCGCCA-TCGCCA-TCGCCA-TCGCCA-TCGCCA-TCGCCA-TCGCCADesign primers
1437209GGAACGAAGACAAGC-CGAACGAAGACAAGC-CGAACGAAGACAAGC-CGAACGAAGACAAGC-CGAACGAAGACAAGC-CGAACGAAGACAAGC-CGAACGAAGACAAGCDesign primers
1558184GGATCGCGG-GGATCGCGG-GGATCGCGGDesign primers
1588797CATTGG-CATTGG-CATTGG-CATTGG-CATTGGDesign primers
1793973GCTCGGTTGCCGGCTCGGTTACCGGCTCAGTTGCCGDesign primers
1828558CGCCACGCC-CACCACGCC-CACCACGCC-CACCACGCC-CACCACGCC-CACCACGCC-CACCACGCC-CACCACGCCDesign primers
1870063CTCGCGCTTTCGT-CTGGCGCTTTCGT-CTTGCGCTTTCGT-CTTGCGCTTTCGT-CTTGCGCTTTCGTDesign primers
2216871GAGGCGAGGGCGGGCTGAGGCGAGGGCGGCCTGAGGCGAGGGCGGCCTDesign primers
2298160AGGAGCGGGG-TGGAGCGGGG-TGGAGCGGGG-TGGAGCGGGGDesign primers
2473074GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
2800194TGCTCGTCG-TGCTCGTCG-TGCTCGTCGDesign primers
3058431TTCGTGCTCTAGCTGCGTGCTCTAGCTGCGTGCTCTAGCDesign primers
3845424ATGAAGTCCTCGATGAAGTCCTCCATGAAGTCCCCGDesign primers
3854046GGCGGCGGG-GGCGGCGGG-GGCGGCGGGDesign primers
3879446TTTCATGGCC-TTTCATGGCC-TTTCAAGGCCDesign primers
3929032TCGCATTACATCCGTTGCATTACATCCGCCGCATTACATCCGDesign primers
4205888TGATGCGG-TGATGCGG-TGATGCGGDesign primers
4281617CGCCGCGAATCTTGCCGCGAATCTCGCCGCGAATCTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.