Microsatellites /Tandem Repeats database

Genome: Burkholderia gladioli BSR3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
116022CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCADesign primers
157302CGAGCTGGT-CGAGCTGGT-CGAGCTGGT-CGAGCTGGTDesign primers
228721ATCCGGCCGCG-ATCCGGCCGCG-ATCCGGCCGCG-ATCCGGCCGCGDesign primers
390245CGGAAGCGA-CGGAAGCGA-CGGAAGCGADesign primers
390273GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGAC-GGAGGCGACDesign primers
1410177GCCATC-GCCATC-GCCATC-GCCATC-GCCATC-GCCATC-GCCATC-GCCATCDesign primers
1437210GAACGAAGACAAGCC-GAACGAAGACAAGCC-GAACGAAGACAAGCC-GAACGAAGACAAGCC-GAACGAAGACAAGCC-GAACGAAGACAAGCC-GAACGAAGACAAGCCDesign primers
1558184GGATCGCGG-GGATCGCGG-GGATCGCGGDesign primers
1588797CATTGG-CATTGG-CATTGG-CATTGG-CATTGGDesign primers
1828560CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCA-CCACGCCCADesign primers
1870079GCGCTTTCGTCTT-GCGCTTTCGTCTT-GCGCTTTCGTCTT-GCGCTTTCGTCTTDesign primers
2298161GGAGCGGGGT-GGAGCGGGGT-GGAGCGGGGTDesign primers
2473074GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
2800194TGCTCGTCG-TGCTCGTCG-TGCTCGTCGDesign primers
3854046GGCGGCGGG-GGCGGCGGG-GGCGGCGGGDesign primers
4205888TGATGCGG-TGATGCGG-TGATGCGGDesign primers

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