Microsatellites /Tandem Repeats database

Genome: Xanthobacter autotrophicus Py2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
16041GGGGGCGTTCC-GGGGGCGTTCC-GGGGGCGTGCCDesign primers
939667GACCGAGTATCTGGACCGAGTACCTGGACCGAGTACCTGDesign primers
1061450CAAGACCTCGGGGAA-TAAGACCTCGGGGAA-TAAGACCTCGGGGAA-TAAGACCTCGGGGAADesign primers
1261946CAGGTCA-CAGGTCA-CAGGTCA-CAGGTCA-CAGGTCADesign primers
1333834GATGCCAAGCCGTCCGACGCCAAGCCGTCCGACGCCAAGCCGTCCDesign primers
1545997GGACTTGGAGTCTC-AGACTTGGAGTCTC-AGACTTGGAGTCTCDesign primers
1849470GCTCCCGCCAAGGTTCCCGCCAAGGTTCCCGCCAAGGCTCCGGCCAAGDesign primers
1998865TCGCCCGTCTCCTGC-GCGCCCGTCTCCTGC-GCGCCCGTCTCCTGCDesign primers
2274359ACGGACCTGAATACGGACCTTAATACGGACCCGAATDesign primers
2481704GGCAAGGCACTCGTG-GTCAAGGCACTCGTG-GTCAAGGCACTCGTG-GTCAAGGCACTCGTGDesign primers
2572924CCGCGTCGGGGCTGC-CCTCGTCGGGGCTGC-CCTCGTCGGGGCTGC-CCTCGTCGGGGCTGC-CCTCGTCGGGGCTGC-CCTCGTCGGGGCTGCDesign primers
2751204GTGGAAGTCTCAGGTCGGGTGGAAATCTCAGGTCGGGTGGAAATCTCAGGTCGGDesign primers
2828431GCTGGGATTGGGGCTGGGATTGGCGCTGGGATCGGGDesign primers
2890936GGCAGGTGACGGTTTGGCAAGTGACGGTTTGGCAGGTGACGGTTTDesign primers
3778363GCCCTCGCGTTCCGGGCCCTCGAGTTCCGGGCCCTCGAGTTCCGGGCCCTCGCGTTCTGGDesign primers
3781261CAAGGTCAAGCGGCTCAAGGTCAAGCAGCTCAAGGTCAAGCAGCTDesign primers
3818738CGCTCT-CGCTCT-CGCTCT-CGCTCTDesign primers
3836163GTCCGCCGCGAAGGC-ATCCGCCGCGAAGGC-ATCCGCCGCGAAGGCDesign primers
4094068CGAGCTGGCTGTCGAGCTGGCTGCGGAGCTGGCTGTAGAGCTGGCTGTCGAGCTGGCTGCCGAGCTGGCTGTDesign primers
4094141GAGCTGGCTGCCGAGCTGGCTGCGGAGCTGGCTGCGGAGCTGGCCGCCDesign primers
4094200AGAGCTGGCTGT-CGAGCTGGCTGC-CGAGCTGGCTGT-AGAGCTGGCTGC-CGAGCTGGCTGC-CGAGCTGGCTGC-CGAGCTGGCTGT-AGAGCTGGCTGC-CGAGCTGGCTGC-CGAGCTGGCTGCDesign primers
4094342GTCGAGCTGGCTGTAGAGCTGGCT-GCCGAGCTGGCTGTAGAGCTGGCT-GCCGAGCTGGCTGCCGAGCTGGCT-GCCGAGCTGGCTDesign primers
4094438GTCGAGCTGGCTGTAGAGCTGGCTGCCGAGCTGGCTGTAGAGCTGGCTGCCGAGCTGGCTDesign primers
4094499CGGAGCTGGCTGCGGAGCTGGCCGCCGAGCTGGCTGDesign primers
4094536AGAGCTGGCTGC-CGAGCTGGCTGC-GGAGCTGGCTGC-CGAGCTGGCTGC-CGAGCTGGCTGCDesign primers
4227782GTCGCCCCCGATACTGGCGCCCCCGATACTGGCGCCCCCGATACTDesign primers
4286789GCGGCCAAGCCCGCCGCCAAGCCCGCCGCCAAGCCCDesign primers
5121789CCTGGACCA-CCTGGACCA-CCTGGACCADesign primers
5239082ACCAGGACC-ACCAGGACC-ACCAGGACCDesign primers

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