Microsatellites /Tandem Repeats database

Genome: Blochmannia pennsylvanicus str. BPEN (candidatus)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
117369ATTTTTATTTTCGTTTTTATTTTAAATTTTDesign primers
125559ATTAATATTATTATTAGTAATAATDesign primers
151591ATAATTATATAGTTATATAATCATDesign primers
201258GCTGAC-ATTGAC-ATTGAC-ATTGAC-ATTGAC-ATTGACDesign primers
229256AAATATTTTAATATTTAAATTTTTDesign primers
265342TAT-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
302479ATTAAACTAAAATAAATTAAATTATDesign primers
349092AAAAAAATAACAAAAAAAACCAAAAAAACADesign primers
362078GGTATTAAAACAGTATTAATACCGTATGAAAACDesign primers
455255AAGCTGTTCAAGGTGTTCAATCTGTTCDesign primers
514346TTTATACTTTTATATTTTTATAGTDesign primers
532420ATAAT-ATAAT-TTAAT-TTAAT-ACAATDesign primers
533486ATTATTAATTGTTGTTAATTATTTTTATTTDesign primers
610135TATATATAACATATATAATATATATTADesign primers
673474TATAATTAGTGTAAAAATAGTGATTAATTAGTGDesign primers
745665TTGTTTAATGTTAATTAATGTTGATTTATGDesign primers
763332AAATAATTTAAATAATATAAATAATGTDesign primers
766243AT-AT-AA-AT-AC-AT-AA-AT-AT-AT-AT-ATDesign primers
766959AATTAAAAGTAATTAAAAATGATTAATAGTDesign primers

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