This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 0 | AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT | Design primers |
| 5093 | TTCTTAAAG-TTCTTAAAG-TTCTTAAAG | Design primers |
| 6638 | TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG | Design primers |
| 91534 | GGAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA | Design primers |
| 96480 | GGCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA | Design primers |
| 161856 | GGAACAAGAACAACAAAAGAC-AGAACAAGAAAAACAAAAGAC-AGAACAAGAAAAACAAAAGAC-AGAACAAGAAAAACAAAAGAC-AGAACAAGAAAAACAAAAGAC-AGAACAAGAACAACAAAAGAC | Design primers |
| 235263 | AA-TA-GG-GC-GT-GA-AA-GA-GG-GC-GT-GA-AA-GA-GG-GC-GT-GA | Design primers |
| 241888 | ATGAAAACA-ATGAAAACA-ATGAAAACA | Design primers |
| 280959 | ATTAAATA-CATAAATA-CATAAATA-TATAAATA-CATAAATA-CATAAATA-CATAAATA-CATAAATA-CATAAATA | Design primers |
| 341988 | CCTTTAATCT-TATTTAATCT-TATTTAATCT-TATTTAATCT-TATTTAATCT-TATTTAATCT | Design primers |
| 396102 | ATAGAGTTAAAAAA-AGAGAGTTAAAAAA-AGAGAGTTAAAAAA-AGAGAGTTAAAAAA-AGAGAGTTAAAAAA | Design primers |
| 660086 | TTTTCTACATCTTGCGGT-ATTTCTACATCTTGCGGT-ATTTCTACATCTTGCGGT-ATTTCTACATCTTGCGGT-ATTTCTACATCTTGCGGT | Design primers |
| 940263 | GGCAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC | Design primers |
| 943182 | TTTGCGCGATTTTTTGGGCGATTTTTTGCGCGCTTT | Design primers |
| 959369 | ATAGGGCATGTAATAATAAGGCATGTAATAATAAGGCATGTAATA | Design primers |
| 1099746 | TTCTTTTTTAAGAAT-TTCTTTTTTAAGATT-TTCTTTTTTAAGAAT-TTCTTTTTTAAGAAT-TTCTTTTTTAAGAAT-TTCTTTTTTAAGAAT-TTCTTTTTTAAGAAT-TTCTTTTTTAAGAAT | Design primers |
| 1121229 | TTTTAATTCTGT-GTTTAATTCTGT-GTTTAATTCTGT | Design primers |
| 1288090 | CAAAGACAACGA-AAATGACAACGA-AAATGACAACGA-AAATGACAACGA-AAATGACAACGA-AAATGACAACGA | Design primers |
| 1298098 | AAGAAGTGGTGTGATA-TAGAAGTGGTGTGATA-TAGAAGTGGTGTGATA-TAGAAGTGGTGTGATA-TAGAAGTGGTGTGATA | Design primers |
| 1360614 | GGCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA-ATCATTCA | Design primers |
| 1413101 | GCTCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA | Design primers |
| 1425358 | GA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA | Design primers |
| 1551262 | CGCTACCATAACTTGCGCTACCATAACTCGCGCTACCATAACTCG | Design primers |
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