Microsatellites /Tandem Repeats database

Genome: Serratia symbiotica str. 'Cinara cedri'

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11247TATAGATAT-TACAGATAT-TACAGATAT-TACAGATAT-TACAGATAT-TACAGATATDesign primers
25079AGATATAT-AGATATAT-AGATATATDesign primers
49575CTATATAT-CTATATAT-CTATATAT-CTATATATDesign primers
59879TTAGTACA-TTAGTACA-TTAGTACADesign primers
60324GAAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAAT-TTAT-TAATDesign primers
78223GCACGACCA-GCACGACCA-GCACGACCADesign primers
150664TTAATAT-ATATTAT-ATATTAT-ATATTAT-ATATTAT-ATATTAT-ATATTAT-ATATTAT-ATATTATDesign primers
157496CATGCCACC-CATGCCACC-CATGCCACC-CATGCCACCDesign primers
179313TGCTAATATAGGTA-GGCTAATATAGGTA-GGCTAATATAGGTADesign primers
232520TTATAGGTT-TTATAGGTT-TTATAGGTTDesign primers
256773AAGATACCCT-TAGATACCCT-TAGATACCCTDesign primers
259629CAGTAT-GAGTAT-GAGTAT-GAGTAT-GAGTAT-GAGTAT-GAGTAT-GAGTATDesign primers
270179TTGACTCTA-TTGACTCTA-TTGACTCTADesign primers
301882TTATAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTC-TATTAGTCDesign primers
318345TAGTATAT-TAGTATAT-TAGTATAT-TAGTATAT-TAGTATATDesign primers
324526TTGTAATAGTTTC-CTGTAATAGTTTC-CTGTAATAGTTTCDesign primers
329590TTAAAAATTT-ATAAAAATTT-ATAAAAATTTDesign primers
332776AGTTTAGC-AGTTTAGC-AGTTTAGCDesign primers
343945GCTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATT-ATTACATTDesign primers
352020TTAATTTAGT-TTAATTGAGT-TTAATTGAGT-TTAATTGAGT-TTAATTGAGTDesign primers
372876TTAAAAA-TTTAAAA-TTAAAAA-TTAAAAA-TTAAAAA-TTAAAAADesign primers
383047ATAAATAT-ATAAATAT-ATAAATAT-ATAAATATDesign primers
388642AGTTACTCG-AGTTACTCG-AGTTACTCGDesign primers
388678AGTTGATCT-AGTTGATCT-AGTTGATCTDesign primers
439845AAGATAGT-AAGATAGT-AAGATAGT-AAGATAGTDesign primers
487276CTTCTTAG-CTTCTTAG-CTTCTTAG-CTTCTTAGDesign primers
497983CTATGT-CTATAT-CTATAT-CTATAT-CTATAT-CTATATDesign primers
507943ATATGTA-ATATGTA-ATATGTA-ATATGTA-ATATGTADesign primers
509824TTAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATT-TAAGATATTDesign primers
516300TTATAAT-TTATAAT-TTATAAT-TTATAAT-TTATAATDesign primers
567781TATTGTCT-TATTGTCT-TATTGTCT-TATTGTCTDesign primers
584667TGTGTACT-TGTGTACT-TGTGTACT-TGTGTACT-TGTGTACTDesign primers
596333TATATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATGDesign primers
650057CAGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATA-TTGTATADesign primers
651934TTATT-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTGDesign primers
672785ATATATT-ATATATT-ATATATT-ATATATT-ATATATTDesign primers
695622AATTTTA-TATTTTA-TATTTTA-TATTTTA-TATTTTA-TATTTTA-TATTTTA-TATTTTADesign primers
705901ACTATA-TCTATA-TCTATA-TCTATA-TCTATA-TCTATA-TCTATA-TCTATADesign primers
726808TGTTTAGCT-AGTTTAGCT-AGTTTAGCT-AGTTTAGCT-AGTTTAGCT-AGTTTAGCTDesign primers
762091TATTAGTT-AATTAGTT-AATTAGTT-AATTAGTT-AATTAGTT-AATTAGTTDesign primers
762960TATTTA-TATTAA-TATTAA-TATTAA-TATTAA-TATTAADesign primers
763555ATATTAA-TTATTAA-TTATTAA-TTATTAA-TTATTAA-TTATTAADesign primers
799098TTATAGTT-ATATAGTT-ATATAGTT-ATATAGTT-ATATAGTT-ATATAGTTDesign primers
832580ATATAA-ATATAA-ATATAA-ATATAADesign primers
921801AATAAG-AATAAG-AATAAG-AATAAG-AATAAGDesign primers
932603TAAAATACA-TAAAATACA-TAAAATACADesign primers
938242TAAATAAT-AAAGTAAT-AAAGTAAT-AAAGTAAT-AAAGTAAT-AAAGTAAT-AAAGTAAT-AAAGTAAT-AAAGTAATDesign primers
976800TAAA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATA-GATADesign primers
1020088CAACATA-TAACATA-TAACATA-TAACATA-TAACATA-TAACATADesign primers
1030756ATAAAAAT-ATAAAAAT-ATAAAAATDesign primers
1073873TACACTA-TCAACTA-TCAACTA-TCAACTA-TCAACTA-TCAACTA-TCAACTA-TCAACTA-TCAACTADesign primers
1075105TATGCC-TATGCC-TATGCC-TATGCC-TATGCCDesign primers
1098809AGAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAG-GAAATAGDesign primers
1116921AAATCAA-TAATCAA-TAATCAA-TAATCAA-TAATCAA-TAATCAADesign primers
1118256TAATAAAATATACTAAAATATACTAAAATADesign primers
1149091AATATAAT-AATATAAT-AATATAAT-AATATAATDesign primers
1168615CAATACTAC-CAATACTAC-CAATACTAC-CAATACTACDesign primers
1173888TTATTCAAAT-ATATTCAAAT-ATATTCAAATDesign primers
1187938ATATTGGA-TTATTGGA-TTATTGGA-TTATTGGA-TTATTGGA-TTATTGGA-TTATTGGA-TTATTGGADesign primers
1190248TAAA-TAAA-TAAA-TAAA-TAAA-TAAADesign primers
1228625TATAT-TATAT-TATAT-TATAT-TATATDesign primers
1249891ACTAGTTA-GATAGTTA-GATAGTTA-GATAGTTA-GATAGTTA-GATAGTTA-GATAGTTA-GATAGTTA-GATAGTTADesign primers
1258674TAGTA-TAATA-TAATA-TAATA-TAATA-TAATADesign primers
1281635ATTTTATTTTATTTTATTTCATTTAATTTTDesign primers
1304918TAATTAT-AAATTAT-AAATTAT-AAATTAT-AAATTAT-AAATTATDesign primers
1305003ATATA-AAATA-AAATA-AAATA-AAATA-AAATA-AAATA-AAATADesign primers
1323639GCTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGAT-ACTGATDesign primers
1337677TAAAATA-TAAAATA-TAAAATA-TAAAATA-TAAAATADesign primers
1337713GAAATAT-GAAATAT-GAAATAT-GAAATAT-GAAATAT-GAAATATDesign primers
1364841AATAA-AATAA-AATAA-AATAA-AATAADesign primers
1366735TTTATATA-TTTATATA-TTTATATADesign primers
1375537CTAATAT-TAAATAT-TAAATAT-TAAATAT-TAAATAT-TAAATAT-TAAATAT-TAAATAT-TAAATATDesign primers
1379434CGTAATATA-CGTAATATA-CGTAATATADesign primers
1380738AGTATTTTT-AGTATTTTT-AGTATTTTT-AGTATTTTTDesign primers
1408523AATAATAG-ATAAATAG-ATAAATAG-ATAAATAG-ATAAATAG-ATAAATAG-ATAAATAG-ATAAATAG-ATAAATAGDesign primers
1435136ATCATCT-ATTATCT-ATTATCT-ATTATCT-ATTATCT-ATTATCT-ATTATCT-ATTATCTDesign primers
1437726ATAATAAA-ATATTAAA-ATATTAAA-ATATTAAA-ATATTAAA-ATATTAAADesign primers
1469187AGCAAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAAT-AGATAATDesign primers
1473795TTAGCAT-TTAGCAT-TTAGCAT-TTAGCAT-TTAGCATDesign primers
1483070TGTGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAAC-AATGAACDesign primers
1495777CTTATTATCTATACTAATTATCTATACTAATTATCTATADesign primers
1532316ATAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAADesign primers
1542363AAGATAT-AAGATAT-AAGATAT-AAGATATDesign primers
1568557TA-CT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-AT-AA-AT-ATDesign primers
1568654AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATA-AGTATADesign primers
1576946TCTAATA-TCAAATA-TCAAATA-TCAAATA-TCAAATA-TCAAATADesign primers
1612031CATAAAATA-CATAAAATA-CATAAAATADesign primers
1619831ATACACAT-CTACACAT-CTACACAT-CTACACAT-CTACACAT-CTACACATDesign primers
1622025AAAAATACAAATACAAATACAAATACAAATACAAATDesign primers
1622271AATAAAT-AATAAAT-AATAAAT-AATAAATDesign primers
1670314TATTATAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGA-TATTACAGADesign primers
1677029TTTAATTATAC-GTTAATTATAC-GTTAATTATACDesign primers
1689761TTAGTC-TTAGTT-TTAGTT-TTAGTT-TTAGTT-TTAGTTDesign primers
1712824ATAAAATA-ATAAAATA-ATAAAATA-ATAAAATADesign primers
1728714ACTATTATAT-TCTATTATAT-TCTATTATATDesign primers
1746107TAGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTT-TTGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTCDesign primers
1759304AA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AA-TA-AADesign primers
1759353ATTATAAAT-ATTATAAAT-ATTATAAAT-ATTATAAAT-ATTATAAAT-ATTATAAATDesign primers
1759408TAATAAATA-TAATAAATA-TAATAAATADesign primers
1759436TATAAATAT-TATAAATAT-TATAAATATDesign primers

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