Microsatellites /Tandem Repeats database

Genome: Serratia symbiotica str. 'Cinara cedri'

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11250AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTACDesign primers
25079AGATATAT-AGATATAT-AGATATATDesign primers
49575CTATATAT-CTATATAT-CTATATAT-CTATATATDesign primers
59879TTAGTACA-TTAGTACA-TTAGTACADesign primers
60326ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTT-ATTAATTTDesign primers
78223GCACGACCA-GCACGACCA-GCACGACCADesign primers
150668TATATAT-TATATAT-TATATAT-TATATAT-TATATAT-TATATAT-TATATAT-TATATAT-TATATATDesign primers
157496CATGCCACC-CATGCCACC-CATGCCACC-CATGCCACCDesign primers
179314GCTAATATAGGTAG-GCTAATATAGGTAG-GCTAATATAGGTAGDesign primers
232520TTATAGGTT-TTATAGGTT-TTATAGGTTDesign primers
256774AGATACCCTT-AGATACCCTT-AGATACCCTTDesign primers
259630AGTATG-AGTATG-AGTATG-AGTATG-AGTATG-AGTATG-AGTATGDesign primers
270179TTGACTCTA-TTGACTCTA-TTGACTCTADesign primers
301885TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTAT-TAGTCTATDesign primers
318345TAGTATAT-TAGTATAT-TAGTATAT-TAGTATAT-TAGTATATDesign primers
329591TAAAAATTTA-TAAAAATTTA-TAAAAATTTADesign primers
332776AGTTTAGC-AGTTTAGC-AGTTTAGCDesign primers
343947TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTAT-TACATTATDesign primers
352027AGTTTAATTG-AGTTTAATTG-AGTTTAATTG-AGTTTAATTGDesign primers
372886AAAATTA-AAAATTA-AAAATTA-AAAATTADesign primers
383047ATAAATAT-ATAAATAT-ATAAATAT-ATAAATATDesign primers
388642AGTTACTCG-AGTTACTCG-AGTTACTCGDesign primers
388678AGTTGATCT-AGTTGATCT-AGTTGATCTDesign primers
439845AAGATAGT-AAGATAGT-AAGATAGT-AAGATAGTDesign primers
487276CTTCTTAG-CTTCTTAG-CTTCTTAG-CTTCTTAGDesign primers
497988TCTATA-TCTATA-TCTATA-TCTATA-TCTATADesign primers
507943ATATGTA-ATATGTA-ATATGTA-ATATGTA-ATATGTADesign primers
509826AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTA-AGATATTTADesign primers
516300TTATAAT-TTATAAT-TTATAAT-TTATAAT-TTATAATDesign primers
567781TATTGTCT-TATTGTCT-TATTGTCT-TATTGTCTDesign primers
584667TGTGTACT-TGTGTACT-TGTGTACT-TGTGTACT-TGTGTACTDesign primers
596335TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCT-TATGCTDesign primers
650059GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATT-GTATATTDesign primers
651939TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTG-TTGTGDesign primers
672785ATATATT-ATATATT-ATATATT-ATATATT-ATATATTDesign primers
695623ATTTTAT-ATTTTAT-ATTTTAT-ATTTTAT-ATTTTAT-ATTTTAT-ATTTTAT-ATTTTATDesign primers
705902CTATAT-CTATAT-CTATAT-CTATAT-CTATAT-CTATAT-CTATAT-CTATAT-CTATATDesign primers
726809GTTTAGCTA-GTTTAGCTA-GTTTAGCTA-GTTTAGCTA-GTTTAGCTA-GTTTAGCTA-GTTTAGCTADesign primers
762092ATTAGTTA-ATTAGTTA-ATTAGTTA-ATTAGTTA-ATTAGTTA-ATTAGTTADesign primers
762965ATATTA-ATATTA-ATATTA-ATATTA-ATATTADesign primers
763556TATTAAT-TATTAAT-TATTAAT-TATTAAT-TATTAAT-TATTAAT-TATTAATDesign primers
799099TATAGTTA-TATAGTTA-TATAGTTA-TATAGTTA-TATAGTTA-TATAGTTADesign primers
832580ATATAA-ATATAA-ATATAA-ATATAADesign primers
921801AATAAG-AATAAG-AATAAG-AATAAG-AATAAGDesign primers
932603TAAAATACA-TAAAATACA-TAAAATACADesign primers
938246TAATAAAG-TAATAAAG-TAATAAAG-TAATAAAG-TAATAAAG-TAATAAAG-TAATAAAG-TAATAAAGDesign primers
976803AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGAT-AGATDesign primers
1020089AACATAT-AACATAT-AACATAT-AACATAT-AACATAT-AACATATDesign primers
1030756ATAAAAAT-ATAAAAAT-ATAAAAATDesign primers
1073876ACTATCA-ACTATCA-ACTATCA-ACTATCA-ACTATCA-ACTATCA-ACTATCA-ACTATCA-ACTATCADesign primers
1075105TATGCC-TATGCC-TATGCC-TATGCC-TATGCCDesign primers
1098811AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGA-AATAGGADesign primers
1116922AATCAAT-AATCAAT-AATCAAT-AATCAAT-AATCAAT-AATCAAT-AATCAATDesign primers
1149091AATATAAT-AATATAAT-AATATAAT-AATATAATDesign primers
1168615CAATACTAC-CAATACTAC-CAATACTAC-CAATACTACDesign primers
1173889TATTCAAATA-TATTCAAATA-TATTCAAATADesign primers
1187939TATTGGAT-TATTGGAT-TATTGGAT-TATTGGAT-TATTGGAT-TATTGGAT-TATTGGAT-TATTGGATDesign primers
1190248TAAA-TAAA-TAAA-TAAA-TAAA-TAAADesign primers
1228625TATAT-TATAT-TATAT-TATAT-TATATDesign primers
1249893TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGA-TAGTTAGADesign primers
1258677TATAA-TATAA-TATAA-TATAA-TATAADesign primers
1304919AATTATA-AATTATA-AATTATA-AATTATA-AATTATA-AATTATADesign primers
1305005ATAAA-ATAAA-ATAAA-ATAAA-ATAAA-ATAAA-ATAAA-ATAAADesign primers
1323640CTGATA-CTGATA-CTGATA-CTGATA-CTGATA-CTGATADesign primers
1337677TAAAATA-TAAAATA-TAAAATA-TAAAATA-TAAAATADesign primers
1337713GAAATAT-GAAATAT-GAAATAT-GAAATAT-GAAATAT-GAAATATDesign primers
1364841AATAA-AATAA-AATAA-AATAA-AATAADesign primers
1366735TTTATATA-TTTATATA-TTTATATADesign primers
1375539AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTA-AATATTADesign primers
1379434CGTAATATA-CGTAATATA-CGTAATATADesign primers
1380738AGTATTTTT-AGTATTTTT-AGTATTTTT-AGTATTTTTDesign primers
1408526AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATA-AATAGATADesign primers
1435139ATCTATT-ATCTATT-ATCTATT-ATCTATT-ATCTATT-ATCTATT-ATCTATTDesign primers
1437730TAAAATAT-TAAAATAT-TAAAATAT-TAAAATAT-TAAAATATDesign primers
1469191AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGAT-AATAGATDesign primers
1473795TTAGCAT-TTAGCAT-TTAGCAT-TTAGCAT-TTAGCATDesign primers
1483072TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAA-TGAACAADesign primers
1532318AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1542363AAGATAT-AAGATAT-AAGATAT-AAGATATDesign primers
1568560TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AA-TA-TA-AADesign primers
1568651ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGT-ATAAGTDesign primers
1576949AATATCA-AATATCA-AATATCA-AATATCA-AATATCA-AATATCADesign primers
1612031CATAAAATA-CATAAAATA-CATAAAATADesign primers
1619832TACACATC-TACACATC-TACACATC-TACACATC-TACACATCDesign primers
1622027AAATAC-AAATAC-AAATAC-AAATAC-AAATAC-AAATAC-AAATACDesign primers
1622271AATAAAT-AATAAAT-AATAAAT-AATAAATDesign primers
1670320AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTAC-AGATATTACDesign primers
1689767TTAGTT-TTAGTT-TTAGTT-TTAGTT-TTAGTTDesign primers
1712824ATAAAATA-ATAAAATA-ATAAAATA-ATAAAATADesign primers
1728715CTATTATATT-CTATTATATT-CTATTATATTDesign primers
1746109GTTTTCTT-GTTTTCTT-GTTTTCTT-GTTTTCTTDesign primers
1746147TTGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTC-TTGTTTTCDesign primers
1759305AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAATDesign primers
1759354TTATAAATA-TTATAAATA-TTATAAATA-TTATAAATA-TTATAAATA-TTATAAATADesign primers
1759409AATAAATAT-AATAAATAT-AATAAATATDesign primers

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