Microsatellites /Tandem Repeats database

Genome: Methanohalophilus mahii DSM 5219

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
136078AAATATTCAGAACTCTTCAGTAATTTTCAGDesign primers
173008TCATAATTTATCATCCTTTATCAAAAATTADesign primers
211875GAAGAAGTAGAAGAGGAAGAAGAADesign primers
212152TGCAGCAGCACCAGCAGCGGCACCAGCAGCAGCACCDesign primers
216951GAG-GAA-GAA-GAA-GAG-GAA-GAA-GAADesign primers
539017CTCTAAACGTATCCGTTCAATCGGACCTTAAACGTATCCGTTCATCCGGACCTTTAGTGTATCCGTTCAATCGGADesign primers
656200TT-TT-CT-CT-TC-TT-CT-CT-TT-TC-TT-TT-TDesign primers
723067ATCAGCGAACTTCACAATAGTGAACTTCACAATAGTGAACTTCACDesign primers
821389TAATTGTAAATGTACTTGGAATTGDesign primers
848109AAAAAGT-TAAAAGT-TAAAAGT-TAAAAGTDesign primers
1094064TCA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
1188874ACTTGAGTTGAATTGAGTTGAGTTGDesign primers
1212306GTTTTTTCTGTTTTCTCTGTGTTTTCTDesign primers
1231187TGTTGTTGCTGTTGTTGTTGTTTTDesign primers
1386329AAAATAATAAACTAATAAAATATTDesign primers
1390586GAAAAATAAAAAGGAAAAGGAAAADesign primers
1568455CATAT-AATAT-AATAT-TATAT-AATATDesign primers
1850875AATATCCAGAATACCCAGAGTATCCAGDesign primers
1979885CGGGCTCTTCAGGCTCGACTGGTTCTTCAGGCTCAACAGGTTCTTCGGGCTCGACTGGTTCTTCAGGCTCGADesign primers

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