Microsatellites /Tandem Repeats database

Genome: Thioalkalivibrio sp. HL-EbGR7

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
77731CCGGCC-CCGGCC-CCGGCC-CCGGCC-CCGGCCDesign primers
94397CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
124902ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
130750CCCTTCA-CCCTTCA-CCCTTCA-CCCTTCA-CCCTTCADesign primers
130786CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCACDesign primers
138811GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
188875GTCTCTGC-GTCTCTGC-GTCTCTGCDesign primers
214806CCTTCGCG-CCTTCGCG-CCTTCGCGDesign primers
230017TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
238932GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTADesign primers
298841CGCGGAGG-CGCGGAGG-CGCGGAGG-CGCGGAGGDesign primers
305566TCCGCGTC-TCCGCGTC-TCCGCGTCDesign primers
305873CACGGAGA-CACGGAGA-CACGGAGA-CACGGAGA-CACGGAGA-CACGGAGADesign primers
327608ACGCAAAG-ACGCAAAG-ACGCAAAG-ACGCAAAGDesign primers
327686CTTTGCGT-CTTTGCGT-CTTTGCGTDesign primers
366617CGCAGAGG-CGCAGAGG-CGCAGAGG-CGCAGAGGDesign primers
410340AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCTDesign primers
421972CTTTGA-CTTTGA-CTTTGA-CTTTGADesign primers
459607CAAGAGA-CAAGAGA-CAAGAGA-CAAGAGA-CAAGAGADesign primers
461490TCACTTC-TCACTTC-TCACTTC-TCACTTCDesign primers
468084CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAACDesign primers
468221CCCGAA-CCCGAA-CCCGAA-CCCGAADesign primers
468246CGGAGCCCGAAC-CGGAGCCCGAAC-CGGAGCCCGAAC-CGGAGCCCGAACDesign primers
479658CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCADesign primers
482287ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
530138TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
587058CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
675519TTCCCAC-TTCCCAC-TTCCCAC-TTCCCACDesign primers
681724AATTCAA-AATTCAA-AATTCAA-AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
708827TCACCCC-TCACCCC-TCACCCC-TCACCCC-TCACCCC-TCACCCCDesign primers
715638ACTTCCA-ACTTCCA-ACTTCCA-ACTTCCA-ACTTCCADesign primers
735284ACAGGATTA-ACAGGATTA-ACAGGATTADesign primers
746154CGCCTCC-CGCCTCC-CGCCTCC-CGCCTCC-CGCCTCCDesign primers
778241GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTT-GCCACTTDesign primers
790135AATTCGAAGGCTA-AATTCGAAGGCTA-AATTCGAAGGCTA-AATTCGAAGGCTADesign primers
882328ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
913501TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCC-TGACTCCDesign primers
927717GGAACC-GGAACC-GGAACC-GGAACC-GGAACC-GGAACC-GGAACC-GGAACC-GGAACC-GGAACCDesign primers
927805CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAADesign primers
927848CCGAGCCCGAAC-CCGAGCCCGAAC-CCGAGCCCGAACDesign primers
952759GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGTDesign primers
963653CTCTGTGAC-CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
965312ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCCDesign primers
997360ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
997415TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
1023758ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
1039196CGCAAAGG-CGCAAAGG-CGCAAAGGDesign primers
1114877GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTADesign primers
1119459GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
1260950TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTCDesign primers
1288504TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
1313251TTGAATC-TTGAATC-TTGAATC-TTGAATC-TTGAATCDesign primers
1325054CACCCTTCCCAATT-CACCCTTCCCAATT-CACCCTTCCCAATT-CACCCTTCCCAATTDesign primers
1351338GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTADesign primers
1351414AGCTACT-AGCTACT-AGCTACT-AGCTACTDesign primers
1366242AGGCGTA-AGGCGTA-AGGCGTA-AGGCGTA-AGGCGTADesign primers
1373452TTCTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCACDesign primers
1425970CGTGAGG-CGTGAGG-CGTGAGG-CGTGAGGDesign primers
1454545CCTCTGTGT-CCTCTGTGT-CCTCTGTGTDesign primers
1550079GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTADesign primers
1582268ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCCDesign primers
1624280CTTTGCGGA-CTTTGCGGA-CTTTGCGGADesign primers
1640845AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
2095312GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTGDesign primers
2095535GTCTTCGC-GTCTTCGC-GTCTTCGCDesign primers
2097863TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCT-TTGTGCTDesign primers
2102147CGCAGAGG-CGCAGAGG-CGCAGAGGDesign primers
2105906CGCGGAGG-CGCGGAGG-CGCGGAGGDesign primers
2134300ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
2172386CACAGAGGG-CACAGAGGG-CACAGAGGGDesign primers
2210131GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTGDesign primers
2210867GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTG-GTGCTTGDesign primers
2232305CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTGDesign primers
2232467GGTCAGG-GGTCAGG-GGTCAGG-GGTCAGGDesign primers
2233294GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTGDesign primers
2250217CGCAAAGGG-CGCAAAGGG-CGCAAAGGG-CGCAAAGGGDesign primers
2253095GATACAA-GATACAA-GATACAA-GATACAADesign primers
2264657TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2352472CGCAGAGA-CGCAGAGA-CGCAGAGA-CGCAGAGA-CGCAGAGADesign primers
2363703AGTGGCA-AGTGGCA-AGTGGCA-AGTGGCADesign primers
2430456GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGTDesign primers
2561796GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
2567214TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2594934CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCADesign primers
2630507ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
2662788CCGGCATGGGCATGGGGC-CCGGCATGGGCATGGGGC-CCGGCATGGGCATGGGGCDesign primers
2662865ATGGGCATGGGACCCGGT-ATGGGCATGGGACCCGGT-ATGGGCATGGGACCCGGTDesign primers
2662920TGGGTA-TGGGTA-TGGGTA-TGGGTA-TGGGTA-TGGGTADesign primers
2676746ATTCAAG-ATTCAAG-ATTCAAG-ATTCAAG-ATTCAAG-ATTCAAG-ATTCAAG-ATTCAAGDesign primers
2820070AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCTDesign primers
2834784CAACTGA-CAACTGA-CAACTGA-CAACTGADesign primers
2879389GACGCAGAG-GACGCAGAG-GACGCAGAGDesign primers
2905898AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
2905945TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2924510GGGGTCA-GGGGTCA-GGGGTCA-GGGGTCA-GGGGTCA-GGGGTCA-GGGGTCADesign primers
3025908TCTCTGCG-TCTCTGCG-TCTCTGCGDesign primers
3067845AGAGACA-AGAGACA-AGAGACA-AGAGACA-AGAGACADesign primers
3067901CTTGTCT-CTTGTCT-CTTGTCT-CTTGTCTDesign primers
3070459GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
3070503ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCT-ACTTCCTDesign primers
3099352GACAAGT-GACAAGT-GACAAGT-GACAAGTDesign primers
3099381GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTGDesign primers
3216397AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
3242577TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTT-TGTGCTTDesign primers
3419439AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGCDesign primers

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