Microsatellites /Tandem Repeats database

Genome: Burkholderia ambifaria MC40-6 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
143536CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
206353TCGGTC-TCGGTC-TCGGTC-TCGGTCDesign primers
685578GGGCGATT-GGGCGATT-GGGCGATTDesign primers
777165GCCGATCA-GCCGATCA-GCCGATCA-GCCGATCA-GCCGATCA-GCCGATCADesign primers
820591GTGCCGGAT-GTGCCGGAT-GTGCCGGATDesign primers
939238GGCGCGGGCACCA-GGCGCGGGCACCA-GGCGCGGGCACCA-GGCGCGGGCACCADesign primers
1275077AGCAGCCGGCGTCGA-AGCAGCCGGCGTCGA-AGCAGCCGGCGTCGADesign primers
1388134GAATCCCCCC-GAATCCCCCC-GAATCCCCCC-GAATCCCCCCDesign primers
1664275CACGGCAT-CACGGCAT-CACGGCAT-CACGGCAT-CACGGCATDesign primers
1772824TTGATCGG-TTGATCGG-TTGATCGG-TTGATCGG-TTGATCGGDesign primers
1793583GAAACGAA-GAAACGAA-GAAACGAA-GAAACGAA-GAAACGAA-GAAACGAADesign primers
1805063GCCTGAGCG-GCCTGAGCG-GCCTGAGCG-GCCTGAGCG-GCCTGAGCG-GCCTGAGCGDesign primers
2152043ACGCCCGCTGCCGGT-ACGCCCGCTGCCGGT-ACGCCCGCTGCCGGTDesign primers
2339121CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCA-CCCTCCTCADesign primers
2678847TTGCGGACGGCCGG-TTGCGGACGGCCGG-TTGCGGACGGCCGG-TTGCGGACGGCCGGDesign primers
2723803GGCACTTCGGGTGGC-GGCACTTCGGGTGGC-GGCACTTCGGGTGGC-GGCACTTCGGGTGGCDesign primers
2724106GGCGGCAACGGC-GGCGGCAACGGC-GGCGGCAACGGC-GGCGGCAACGGC-GGCGGCAACGGC-GGCGGCAACGGCDesign primers
2757510CACGCCGGC-CACGCCGGC-CACGCCGGCDesign primers
2802529CCGGCGACGGGCAAT-CCGGCGACGGGCAAT-CCGGCGACGGGCAATDesign primers
2963497GGCGTCGTCA-GGCGTCGTCA-GGCGTCGTCA-GGCGTCGTCADesign primers
3012870GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGA-GCGTCTGADesign primers
3038324CGGCTGAC-CGGCTGAC-CGGCTGAC-CGGCTGAC-CGGCTGAC-CGGCTGACDesign primers
3139981GCA-GCA-ACA-GCA-GCA-ACA-GCA-GCA-ACADesign primers
3239416GCTGCCGTT-GCTGCCGTT-GCTGCCGTT-GCTGCCGTTDesign primers
3239470GCTGCCGTC-GCTGCCGTC-GCTGCCGTCDesign primers
3345031TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTCDesign primers
3345397GGCGGCGGCGTCTCGCTT-GGCGGCGGCGTCTCGCTT-GGCGGCGGCGTCTCGCTT-GGCGGCGGCGTCTCGCTTDesign primers
3345667GGCGGCGGCATTTCGCTC-GGCGGCGGCATTTCGCTC-GGCGGCGGCATTTCGCTC-GGCGGCGGCATTTCGCTC-GGCGGCGGCATTTCGCTC-GGCGGCGGCATTTCGCTCDesign primers
3345787TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATTDesign primers
3345878CGCTCGGCGGCGGCATCT-CGCTCGGCGGCGGCATCT-CGCTCGGCGGCGGCATCTDesign primers

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