Microsatellites /Tandem Repeats database

Genome: Thiomicrospira crunogena XCL-2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
130086TTTCGGGCTTTCGCGCTTTCCGGCDesign primers
732653TTCTTCCCCAAAACTTCCCCAATTCCTCCCCAADesign primers
746765AGGGTATAAATAGGGTATACGTAAGGTATAAGTDesign primers
820819AGCTGGTTGAACAGCTTGATGAACAGCTTGTTGAACDesign primers
872958AACGTATC-AACGTATC-AACCTATCDesign primers
916676TTT-AAA-AAA-ATG-AAA-AAA-AAA-TAA-AAA-AAADesign primers
917063GCAGCAGCAGCGGTAGCAGCAGAADesign primers
1103936TGCTTTTATGCTATTATGCTTTTTDesign primers
1166160CGCGCATGAACGCATTGTGTATGAACGCATTGTGTATGAACGCATDesign primers
1237937TTTGGTATTTTTAGATATTTTTAGGTATTTDesign primers
1438573TTAGATTAGGTTAGGCTAGATTATADesign primers
1497638ATTCAATTGAATTCGATTAAATTCCDesign primers
1601713CGGCTGCAGGCGTAGGCT-CTGGTTCAGGCGTAGGCT-CTGGTTCAGGCGTAGGCT-CTGGTTCAGGCGTAGGCT-CTGGTTCAGGCGTAGGCTDesign primers
1601804TGGTTCAAGCGCAGGCTCTGGTTCAGGCGCAGGCTCTGGTTCAGGCGCAGGCTCDesign primers
1601859GGTTCAGACTCT-GGTTCAGGCTCT-GGTTCAGGCTCT-GGTTCAGGCTCT-GGTTCAGGCTCT-GGTTCAGGCTCT-GGTTCAGGCTCTDesign primers
1631823TTTCTTATTTTGTTATTTTATTATDesign primers
1759725CCTGAACCATCTCCCGAACCACCTCCTGAACCAGTTDesign primers
1772694AACACCAACGCCAACAGCAACATCDesign primers
1776976ACACAGCCTGAA-CCCAAGCCTGAA-CCCAAGCCTGAA-CCTAAGCCTGAA-CCTAAGCCTGAA-CCTAAGCCTGAADesign primers
1777049CTAAGCCTGAAC-CTAAGCCCGAAC-CTAAGCCCGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CTAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAAC-CCAAGCCTGAACDesign primers
1938494CCACCACATTTACCTTCACCGCATTTGCCTTCACCACACTTCCCTDesign primers
1949619TTTCTTATTTTGTTATTTTATTATTTTATTATTTTATTATDesign primers
2036516TTCCTCATGTTCCTCGTGTTCTTCATGDesign primers
2340017CCATGTCCATTTCCATGCCCATATDesign primers

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