Microsatellites /Tandem Repeats database

Genome: Chlorobium chlorochromatii CaD3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
72836AA-AA-GA-AA-AA-CA-AA-CA-GA-AA-AA-AADesign primers
203832ATAGGTTT-GTAGGTTT-GTAGGTTTDesign primers
204990TTTTACTACCCCACTTACTACCCCATTTACTGCCCCDesign primers
640137TGATAAATGATAAATGATTGATGATGAATGATAAGTGATAGATGATAGATGATAAATGGTGAADesign primers
807791TACGATTGATACGGTTGATACGATAGADesign primers
814898TACCGT-TACCGT-TACGGT-TACCGADesign primers
876284TACGATTGATACGGTTGATACGATAGADesign primers
883358TACCGT-TACCGT-TACGGT-TACCGADesign primers
924207GGTGGG-AATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGT-TATGGTDesign primers
927810GCAATCC-CTAATCC-CTAATCC-CTAATCC-CTAATCC-CTAATCCDesign primers
934776CAATCCC-TAATCCC-TAATCCC-TAATCCCDesign primers
940351AAAAAAAGAATAAAAAAAGAAAAAADesign primers
955496ATTTATCATTAATCATCTATCATTAATCDesign primers
958136CATTAATCATCAATCATTTATCATTATTDesign primers
1091005TTTCCAT-TTACCAT-TTACCAT-TTACCAT-TTACCATDesign primers
1091041TATCATTCATCATTTATCACTTATCATTDesign primers
1461267TGATAAATGATAAGTGATAGATGATAAADesign primers
1531589GATTGTAGGGGCAGATATGGAATCTATAGGGGCAGATATGGAATCTATAGGGGCAGATATGGADesign primers
1584915TTTCGTTTGTTGTTCAAGTCTTGTTTGCTGTTCAAGTCTTGTTTGCTGTTCAAGDesign primers
1654483TATTCAC-CATTCAC-AATTCAC-AATTCAC-CATTCACDesign primers
1749660TGCAGCAGGTGCCTCAGCAGCTGGTGCTTCAGCAGCAGGTGCAGCDesign primers
1757700GTGTCGGGAAAGTGTCGGGATAACGTCGGGAAADesign primers
1839206AAAATAAAAAAAAACAACATATAATDesign primers
1858667GATGACGATGCCGATGAGGATGACGATGAGDesign primers
1932090AAAGCG-CAAGCG-CAAGCG-CAAGCG-CAAGCGDesign primers
2006523TTGCGATGATGGGCGGGTTCG-GGTTGATGATGGGCGGGTTCG-GGTTGATGATGGGCGGGTTCGDesign primers
2117361TAATGGAAATGGTAAAGGAAATGGDesign primers
2179062CCCAAATCG-TCCCAATCG-TCCCAATCG-CCCCAATCG-CCCCAATCG-CCCCAATCGDesign primers
2222856ATCTCTACGATACCATTTCGCCATTCACTACAATACCATTTCACCATTCACTACAATACCATTTCGCCADesign primers
2245168ACGCAAATTAGCCGCTTGCAAATTAGCCCCACGCAAGTTTGCTGCDesign primers
2265136TCACTATCACTTTCGCTATCACGADesign primers
2397020ATTGCTGGGGAA-GTCAGTGGGGAA-GTCAGTGGGGAA-GTCAGTGGGGAA-GTCAGTGGGGAA-GTCAGTGGGGAADesign primers

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