Microsatellites /Tandem Repeats database

Genome: Pseudomonas syringae pv. syringae B728a

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
178550TGCCACGCC-TGCCACGCC-TGCCACGCCDesign primers
575836GCAGGG-GCAGGG-GCAGGG-GCAGGG-GCAGGGDesign primers
608322AGGCTTG-AGGCTTG-AGGCTTG-AGGCTTG-AGGCTTG-AGGCTTGDesign primers
838605GCGAAC-GCGAAC-GCGAAC-GCGAACDesign primers
1314323GGATGTCC-GGATGTCC-GGATGTCCDesign primers
1801518AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCADesign primers
1866152GAGCCT-GAGCCT-GAGCCT-GAGCCTDesign primers
2288622GGAGCTG-GGAGCTG-GGAGCTG-GGAGCTGDesign primers
2288652AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACA-AGCTACADesign primers
2288743GCTTGCA-GCTTGCA-GCTTGCA-GCTTGCA-GCTTGCA-GCTTGCA-GCTTGCA-GCTTGCADesign primers
2314957AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGTDesign primers
2423175ACAAGCT-ACAAGCT-ACAAGCT-ACAAGCT-ACAAGCTDesign primers
2423236CTTGAAG-CTTGAAG-CTTGAAG-CTTGAAGDesign primers
2694640CGTAAC-CGTAAC-CGTAAC-CGTAAC-CGTAAC-CGTAAC-CGTAACDesign primers
3227075TTGTTC-TTGTTC-TTGTTC-TTGTTC-TTGTTCDesign primers
3409783CAATCAGC-CAATCAGC-CAATCAGC-CAATCAGCDesign primers
3632760GGTC-GGTC-GGTC-GGTC-GGTC-GGTC-GGTC-GGTC-GGTC-GGTCDesign primers
3685148CTCATCAGC-CTCATCAGC-CTCATCAGC-CTCATCAGCDesign primers
4255791AGCCGCA-AGCCGCA-AGCCGCA-AGCCGCADesign primers
4255820GCTTGAA-GCTTGAA-GCTTGAA-GCTTGAADesign primers
4910924AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGCDesign primers
5055509AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTACDesign primers
5063287CTGTCAGTT-CTGTCAGTT-CTGTCAGTT-CTGTCAGTTDesign primers
5269326AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCADesign primers
5302381AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCA-AGCTTCADesign primers
5378875CA-CA-AA-CA-CA-AA-CA-CA-AA-CA-CA-AADesign primers
5433219CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTG-CAAGCTGDesign primers
5433269AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTACDesign primers
5469620AGCTGCA-AGCTGCA-AGCTGCA-AGCTGCADesign primers
5469649GCAGAA-GCAGAA-GCAGAA-GCAGAADesign primers
5627453CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCTDesign primers
5782526GCGGAC-GCGGAC-GCGGAC-GCGGACDesign primers

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