Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida KT2440

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1367589GATGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGC-GDesign primers
1370632CGAGAAAGTCGAGAAGGTCGAGAAGGTCGAGAAGGTCGAGAAGGTCGAGAAGGTCGAGAAGGTCGAGAAGGTCGAGAAAGTCGAGAAAGTCGAGAAAGTCGADesign primers
1370735AAAGTCGAA-AAAGTCGAA-AAAGTCGAA-AADesign primers
1370773GGTCGAAAA-GGTCGAAAA-GGTCGAAAA-GGTCGAAAA-GGTCGADesign primers
1719288AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGDesign primers
2085317GCTTCT-GCTTCT-GCTTCT-GCTTCT-GCTTCT-GCTDesign primers
2087918AACCCAAA-AGCCCAAA-AGCCCAAA-AGCCCAAA-AGCCCAAA-AGCCCAAADesign primers
2166720GTAGGGA-GTAGGGA-GTAGGGA-GTAGGGA-GTAGGGDesign primers
2256421CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAADesign primers
2258172GAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGATDesign primers
2414535CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAADesign primers
2414849GAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGATDesign primers
2478402GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGDesign primers
2530808GAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGAT-CAAGATDesign primers
2530861TCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACGDesign primers
2837057CTCGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGC-ATGGTGGCDesign primers
3453918TCAGCTCT-TCAGCTCT-TCAGCTCT-TCAGCTCTDesign primers
4022196TGCTTTTGATCT-GGCTTTTGATCT-GGCTTTTGATCT-TGDesign primers
4022540TCTTGCT-TCTTGCT-TCTTGCT-TCTTGCT-TCTTGDesign primers
4022904AAGCGA-GAGCGA-GAGCGA-GAGCGA-GAGCGA-GAGCGADesign primers
4233461AAGCAG-GAGCAG-GAGCAG-GAGCAG-GAGCAG-GAGCAG-GAGCAG-GAGCAGDesign primers
4808234CCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCDesign primers
4880428CGGCCCAGGCCGCTGCCCAGGCCGCTGCCCAGGCCGDesign primers
4907897GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGDesign primers
4907926TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTDesign primers
4909691TCTTGCT-TCTTGCT-TCTTGCT-TCTTGDesign primers
4910037AAGCAG-AAGCAG-AAGCAG-AAGCAGDesign primers

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