Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli P43/6/78

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
257825ATATT-ATATT-ATATT-ATATT-ATATT-ATATT-ATATT-ATATT-ATATTDesign primers
408310ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
610954AAAAAAAT-AAAAAAAT-AAAAAAATDesign primers
638677TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
639179TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
639417AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
650332GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCTDesign primers
651606GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCT-GGTCTDesign primers
656140GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTTDesign primers
665407ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
1131826ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTAC-ACTACDesign primers
1146978ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
1179871TGAAAAATAATTATA-TGAAAAATAATTATA-TGAAAAATAATTATA-TGAAAAATAATTATA-TGAAAAATAATTATADesign primers
1378075AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
1476496AGAAGAAAACAAAAT-AGAAGAAAACAAAAT-AGAAGAAAACAAAAT-AGAAGAAAACAAAATDesign primers
1605130TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTTDesign primers
1626040ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
1651767AACAATACAAACAAC-AACAATACAAACAAC-AACAATACAAACAACDesign primers
1772094TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTG-TTCTGDesign primers
2305462ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAG-ACAAGDesign primers
2408170CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTG-CTGATTGDesign primers
2524072TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers

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