Microsatellites /Tandem Repeats database

Genome: Erwinia sp. Ejp617

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
131668AAAAATTAAA-AAAAATTAAA-ACAAATTAAADesign primers
590184AATCATTTACCCTCAATCATATACCCTCAATCATATACCCTCDesign primers
622256GAATCAGGC-GAATCAGGC-GAATCAGGC-GAATCAGGCDesign primers
1010895TTGATTTTGAGT-TTAATTTTGAGT-TTAATTTTGAGT-TTAATTTTGAGT-TTAATTTTGAGTDesign primers
1044964CCTGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTTDesign primers
1196220CGGAATGA-TGGAATGA-TGGAATGA-TGGAATGA-TGGAATGA-TGGAATGADesign primers
1209010TAAAGGG-TAGAGGG-TAGAGGG-TAGAGGG-TAGAGGG-TAGAGGGDesign primers
2044142CTTGTTT-CTTGTTT-CTTGTTT-CTTGTTTDesign primers
2045237ATTATCTGC-ATTATCTGC-ATTATCTGCDesign primers
2167495ACAATCAAA-ACAATCAAA-ACAATCAAADesign primers
2611441TTTTCACTGCTATTCACTGCTATTCACTGCDesign primers
2673609ATTGGT-ATTGGT-ATTGGT-ATTGGTDesign primers
2780713ATGTG-CTGTG-CTGTG-CTGTG-CTGTG-CTGTGDesign primers
2783176TTAAAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATAC-TGATACDesign primers
2802694GCTGGTTCAACCGCCGGGGCTGCTTCAACCGCCGGGGCTGGTTCAACCGCCGGADesign primers
2802749CTGCTTCAACCGCCGGAG-CTGCTTCAACCGCCGGAG-CTGCTTTAACCGCCGGAG-CTGCTTCAACCGCCGGAG-CTGCTTCAACCGCCGGGGDesign primers
2802910GCTGATTCAACCGCCGGAGCTGGTTCAACCGCCGGAGCTGCTTCAACCGCCGGAGCTGCTTCAACCGCCGGADesign primers
2879532TTTTTTAATG-TTTTTTAATG-TTTTTTAAGGDesign primers
3720947GAACTATCC-GAACTATCC-GAACTATCCDesign primers
3804530ACTGTCCGTT-GCTGTCCGTT-GCTGTCCGTT-GCTGTCCGTTDesign primers
3804571CTGTCCGTCA-CTGTCCGTCA-CTGTCCGTCA-CTGTCCGTCADesign primers

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