Microsatellites /Tandem Repeats database

Genome: Cellulophaga algicola DSM 14237

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
572411GCCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCADesign primers
681978TGGTTGA-TGGTTGA-TGGTTGA-TGGTTGA-TGGTTGADesign primers
748842TTGA-TTGA-TTGA-TTGA-TTGA-TTGA-TTGADesign primers
750700TTGA-TTGA-TTGA-TTGA-TTGA-TTGA-TTGA-TTGADesign primers
751338TTGA-TTGA-TTGA-TTGA-TTGA-TTGA-TTGADesign primers
756150TAAAAACTTAA-AAAAAACTTAA-AAAAAACTTAADesign primers
898923ATTTTGTTTGATTTTGATTGATTTTGATTGDesign primers
1270272AGTTGGT-TGATGGT-TGATGGT-TGATGGT-TGATGGT-TGATGGT-TGATGGT-TGATGGT-TGATGGTDesign primers
1344638GAAGAGATA-GAAGAGATA-GAAGAGATADesign primers
1593273TTC-TTC-CTC-TTC-TTC-ATC-CTC-TTC-TTC-TTC-CTC-TTCDesign primers
2221030TTACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCATDesign primers
2728444AAGGAGATC-AAGGAGATC-AAGGAGATC-AAGGAGATCDesign primers
3291945TTACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCATDesign primers
3392425TAT-TAT-TAT-TAT-TAT-TAT-TAT-TATDesign primers
3472142ATTTTATA-ATTTTATA-ATTTTATADesign primers
3644798ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers
3689840TTACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCATDesign primers
3862322TAT-TAT-TAT-TAT-TAT-TAT-TAT-TAT-TATDesign primers
3885258TTACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCAT-CAACCATDesign primers
4128786ACAGCTAGAGTT-ACAGCAGGAGTT-ACAGCAGGAGTT-ACAGCAGGAGTT-ACAGCAGGAGTT-ACAGCAGGAGTTDesign primers
4310343AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
4406869AGA-AGA-AGA-ATA-AGA-AGA-AGA-AGA-AGA-AGA-AGA-AGADesign primers
4593186AAT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGT-AGTDesign primers

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