Microsatellites /Tandem Repeats database

Genome: Burkholderia rhizoxinica HKI 454

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
232318AGCCACTGCGGTATG-GGCCACTGCGGTATG-GGCCACTGCGGTATGDesign primers
378447CTGAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAG-CCAAGDesign primers
378548CAAGC-TAAGC-TAAGC-TAAGC-TAAGC-TAAGC-TAAGC-TAAGCDesign primers
608676ATACTCCGCCACTCATCGGCGCGATACCCCGCCACTCATCGGCGTGATACCCCGCCACTCATCGGCGCGATACCCCGCCACTCATCGGCGCGDesign primers
622567TGAGGCCA-TGAGGCCA-TGAGGCCADesign primers
824673CCTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCT-CGTGCTDesign primers
999236TCCCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCA-TCTCTCTCCAGCADesign primers
1008693GTCGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAAC-GACGCGAACDesign primers
1025571AGTGCTC-GGTGCTC-GGTGCTC-GGTGCTC-GGTGCTC-GGTGCTC-GGTGCTC-GGTGCTCDesign primers
1025651GTCCGGT-GTCCGGT-GTCCGGT-GTCCGGTDesign primers
1032863ATCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCGDesign primers
1032984GCCGTGCCAT-GCCGTGCCAT-GCCGTGCCAT-GCCGTGCCGT-GCCGTGCCGTDesign primers
1043798GACCACAC-GACCACAC-GACCACACDesign primers
1140689CGCACTGAGCACTGAGCACTGAGCACTGGGCACTGAGCACTGDesign primers
1140732GCACTGGGCACTGAGCACTGGGCACTGGGCACTGGGCACCGADesign primers
1166471TCCGGCGTATGATCTGC-TCCGGCGTATGATCTGC-TCCGGCGTATGACCTGCDesign primers
1277516AGCACCACAGCACCACAGCACTACAGCACTACAGCACTACAGCACTACAGCACTACAGCACTACAGCACTACDesign primers
1299672TTATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCGDesign primers
1299808CGACACAGACATCGACACAGACACAGACACAGACATDesign primers
1301352CAGCAGAAC-CAACAGAAC-CAACAGAAC-CAACAGAAC-CAACAGAAC-CAACAGAACDesign primers
1301427CAGAATCAG-CAGAATCAG-CAGAATCAG-CAGAATCAG-CAGAATCAGDesign primers
1336607GTACGGGGCTGCG-ATACGGGGCTGCG-ATACGGGGCTGCGDesign primers
1689668CATTACCTGGCCAGTCGGAACCGG-GATTACCTGGCCAGTCGGAACCGG-GATTACCTGGCCAGCCGGAACCGGDesign primers
1689744ACCTGGCCAATCGGAACCCTGATTACCTGGCCAACCGGAACCGTGATTACCTGGCCAGTCGGAGCCCTGATTDesign primers
1765047GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTTDesign primers
1874307GCCCGGCTCA-TCTCGGCTCA-TCTCGGCTCA-TCTCGGCTCA-TCTCGGCTCA-TCTCGGCTCADesign primers
1913688GCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAGDesign primers
2063551GCCGCAT-GCCGCAT-GCCGCAT-GCCGCATDesign primers
2063580CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTGDesign primers
2164430ACAGTGCAGCACAGTGCAGTACAGTACAGCDesign primers
2202126GGCACTAGT-AGCACTAGT-AGCACTAGT-AGCACTAGT-AGCACTAGT-AGCACTAGT-AGCACTAGT-AGCACTAGTDesign primers
2579838TCGGTCGGTTGGTTGGTCGGTCGGTCGGTTGGTCGGTTGGTTGGTTGGDesign primers
2579898GGTTTTA-GGTTTTA-GGTTTTA-GGTTTTADesign primers
2579947GGCA-GGCA-GGCA-GGCA-GGCA-GGCADesign primers
2580543GTCGCTATGCCTCGCCAA-GTCGCTATGCCTCGCCAA-GTCGCTGTGCCTCGCCAA-GTCGCTGTGCCTCGCCAA-GTCGCTGTGCCTCGCCAA-GTCGCTGTGCCTCGCCAADesign primers
2621783CGTGATGTTCGC-TGTGATGTTCGC-TGTGATGTTCGCDesign primers
2634762TCGGCA-TCGGCA-TCGGCA-TCGGCADesign primers
2641879GACAC-GACAC-GACAC-GACAC-GACACDesign primers
2641905GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACADesign primers
2676811CACTGGT-GCCTGGT-GCCTGGT-GCCTGGT-GCCTGGT-GCCTGGT-GCCTGGT-GCCTGGT-GCCTGGTDesign primers

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