Microsatellites /Tandem Repeats database

Genome: Brachyspira hyodysenteriae WA1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1477ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
32043AAGAAGGTATAA-AAGAAGGTATAA-AAGAAGGTATAADesign primers
415549GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTT-GTGTTDesign primers
542377TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTC-TGTTCDesign primers
565582AACAACC-AACAACC-AACAACC-AACAACC-AACAACC-AACAACC-AACAACC-AACAACC-AACAACCDesign primers
655530TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCAC-TCACDesign primers
683057TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
687747TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGAT-TGTTGATDesign primers
691099GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTT-GACTGTTDesign primers
729564TTTCTT-TTTCTT-TTTCTT-TTTCTT-TTTCTTDesign primers
978789CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGCDesign primers
982452TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
1005062AAGAAGGTATTA-AAGAAGGTATTA-AAGAAGGTATTADesign primers
1020294TTTTTATCT-TTTTTATCT-TTTTTATCTDesign primers
1242015GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCG-GTGCGDesign primers
1338686AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1488585CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATA-CCTTGTTCTATADesign primers
1952129TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTTDesign primers
1960784TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTTDesign primers
1963896GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTT-GCTTGTTDesign primers
2013612AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTCDesign primers
2653312TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAG-TATTTCAAGDesign primers
2711331ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCG-ATGCGDesign primers
2863647ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers

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