Microsatellites /Tandem Repeats database

Genome: Burkholderia ambifaria MC40-6 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
143535TCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGADesign primers
206353TCGGTC-TCGGTC-TCGGTC-TCGGTCDesign primers
597759GGCCGGTTGGACGACCGGTTGGACGGCCGGTTGGATDesign primers
685578GGGCGATT-GGGCGATT-GGGCGATTDesign primers
777159CGATCGGC-CGATCAGC-CGATCAGC-CGATCAGC-CGATCAGC-CGATCAGCDesign primers
820591GTGCCGGAT-GTGCCGGAT-GTGCCGGATDesign primers
939237GGGCGCGGGCACC-AGGCGCGGGCACC-AGGCGCGGGCACC-AGGCGCGGGCACCDesign primers
1275041CGTCGAAGCAGCCGGCGTCGAAGCAGCCGACGTCGCAGCAGCCGGCGTCGAAGCAGCCGGCGTCGAAGCAGCCGGDesign primers
1388132CTGAATCCCC-CCGAATCCCC-CCGAATCCCC-CCGAATCCCCDesign primers
1501958GATGCTGCGGCAGCC-GATGCTGCGGCAGCC-GGTGCTGCGGCAGCCDesign primers
1664267CACGGCAC-CACGGCAT-CACGGCAT-CACGGCAT-CACGGCAT-CACGGCATDesign primers
1772821CGATTGATCGGTTGATCGGTTGATCGGTTGATCGGTTGATCGGTTGATCGATTGATCGATTGATDesign primers
1793581ACGAAACG-AAGAAACG-AAGAAACG-AAGAAACG-AAGAAACG-AAGAAACGDesign primers
1799197CGGGGGCCGGCCATCCGGGGGCCGGCCAACCGGGGGCCGGCCATCDesign primers
1805060GCAGCCTGA-GCGGCCTGA-GCGGCCTGA-GCGGCCTGA-GCGGCCTGA-GCGGCCTGADesign primers
1827920GCATCAGCACCGGCATCAGCAGCGGCATCAGCAGCGDesign primers
1889677CGGCCATCCGCGGTCATCCGCGGCGATCCGDesign primers
1961636GCGACGACGTCGGCGACCACGTCGGCCACGACGTCGDesign primers
2152042GACGCCCGCTGCCGG-TACGCCCGCTGCCGG-TACGCCCGCTGCCGGDesign primers
2277672GGCGCGGCTGCGGGAGCGGCTGCGGGAGCGGCTGCGDesign primers
2339097TCCTCGCCCTCCTCACCC-TCCTCGCCCTCCTCACCC-TCCTCACCCTCCTCACCC-TCCTCACCCTCCTCACCC-TCCTCACCCTCCTCACCC-TCCTCACCCTCCTCACCCDesign primers
2339220CCCTCCTCACCCTCCTCACCCTCCTCGCCCTCCTCACCCTCCTCACCCTCCTCGDesign primers
2490470GCCGCCGCGTTCACCGCCGCGTTCGCCGCCGCGCTCDesign primers
2606606CCCGTGCCTGCGCCCATGCCTGCGCCCGTGCCCGCGDesign primers
2678845GTTTGCGGACGGCC-GGTTGCGGACGGCC-GGTTGCGGACGGCC-GGTTGCGGACGGCCDesign primers
2723785GGCGGCACTTCGGGT-GGTGGCACTTCGGGT-GGCGGCACTTCGGGT-GGCGGCACTTCGGGT-GGCGGCACTTCGGGTDesign primers
2723861GCGGTACCTCGGGTG-GCGGTACCTCGGGTG-GCGGTACCTCAGGTGDesign primers
2724028CACGGCGGCGGC-AACGGCGGCGGT-CACGGCGGCGGC-AGCGGCGGCGGC-AACGGCGGCGGT-AACGGCGGCGGT-CACGGTGGCGGC-AACGGCGGCGGC-AACGGCGGCGGC-AACGGCGGCGGC-AACGGCGGCGGC-AACGGCGGCGGCDesign primers
2724202GGCGGCAGCGGT-GGCGGCAGCGGT-GGCGGCAACGGTDesign primers
2729467GTGCCGGTACGCCCGAGCCGGTACGCCCGAGCCGGTACGCCCDesign primers
2751756CGGACGGCCGGTCCCGGACGGGCGGTCCCGGACGGCCGGTCADesign primers
2757510CACGCCGGC-CACGCCGGC-CACGCCGGCDesign primers
2802528ACCGGCGACGGGCAA-TCCGGCGACGGGCAA-TCCGGCGACGGGCAADesign primers
2963496CGGCGTCGTC-AGGCGTCGTC-AGGCGTCGTC-AGGCGTCGTCDesign primers
3012868TCGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCT-GAGCGTCTDesign primers
3038321GAGCGGCT-GACCGGCT-GACCGGCT-GACCGGCT-GACCGGCT-GACCGGCTDesign primers
3139981GCA-GCA-ACA-GCA-GCA-ACA-GCA-GCA-ACADesign primers
3239416GCTGCCGTT-GCTGCCGTT-GCTGCCGTT-GCTGCCGTTDesign primers
3239470GCTGCCGTC-GCTGCCGTC-GCTGCCGTCDesign primers
3256912GGCGTCGGGTGC-GGCGTCGGGTGC-GGCGTCGGGCGCDesign primers
3345012TTCGCTCGGCGGCGGCGT-TTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-TTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-TTCGCTCGGCGGCGGCGT-CTCGCTCGGCGGCGGCGT-TTCGCTCGGCGGCGGCGT-TTCGCTCGGCGGCGGCGTDesign primers
3345301TCGCTTGGCGGCGGCGTCTCGCTCGGCGGCGGCGTCTCGCTTGGCGGCGGCGTCTCGCTTGGCGGCGGCGTCDesign primers
3345391TCGCTCGGCGGCGGCGTC-TCGCTTGGCGGCGGCGTC-TCGCTTGGCGGCGGCGTC-TCGCTTGGCGGCGGCGTC-TCGCTTGGCGGCGGCGTC-TCGCTCGGCGGCGGCGTCDesign primers
3345500CGCTTGGCGGCGGCGTTTCGCTCGGCGGCGGCGTTTCGCTCGGCGGCGGCGTTTCGCTTGGCGGCGGCGTTTCGCTTGGCGGCGGCGTCTCGCTCGGCGGCGGCGTTTCGCTTGGCGGCGGCGTCTCGCTTGGCGGCGGCGTTTDesign primers
3345661TCGCTTGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATT-TCGCTCGGCGGCGGCATTDesign primers
3345785TCTCGCTCGGCGGCGGCA-TTTCGCTCGGCGGCGGCA-TTTCGCTCGGCGGCGGCA-TTTCGCTCGGCGGCGGCA-TTTCGCTCGGCGGCGGCA-TTTCGCTCGGCGGCGGCA-TCTCGCTCGGCGGCGGCA-TCTCGCTCGGCGGCGGCADesign primers

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