Microsatellites /Tandem Repeats database

Genome: Shewanella amazonensis SB2B

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
147949CAGGCGGTGGTTCAGGCGGTGGCTCGGGCGGTGGTTDesign primers
331798CATAATC-CGTATTC-CGTATTC-CGTATTC-CGTATTC-CGTATTC-CGTATTC-CGTATTC-CGTATTCDesign primers
681515AAGTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCCDesign primers
815327GTGCCTGTGTCA-CTGCCTGTGTCA-CTGCCTGTGTCADesign primers
880843CGCCCCTGCCGGCGCCCCTGCCCGCGCCCCTGCTGGDesign primers
1345396TGTATTTCAGGACT-GGTATTTCAGGACT-GGTATTTCAGGACT-GGTATTTCAGGACTDesign primers
1377691TCAACTTC-TCAACTTC-TCAACTTCDesign primers
1377795TGAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTA-AAAGCTADesign primers
1408633CCACTAAAACGTCGG-CCACTAAAACGTCGG-CCACTCAAACGTCGGDesign primers
1676020GCAAATAAAGTCGCAAATAAAGCCGCAAATAAAGCCDesign primers
1792779GAATTTGACGCAGATTTTGACGCAGATTTTGACGCADesign primers
1792816ATTTTGAGGCAG-ATTTTGAGGCAG-ATTTTGAGGCAGDesign primers
1822207GACTGGC-GACTGGC-GACTGGC-GACTGGC-GACTGGCDesign primers
1902669GCTTTGCATC-GTTTTGCATC-GTTTTGCATC-GTTTTGCATC-GCTTTGCATCDesign primers
2689519TCCCTTAA-TCCCTTAA-TCCCTTAA-TCCCTTAADesign primers
2698930CTAGATT-CTAGATT-CTAGATT-CTAGATTDesign primers
2705055ATTAACC-ATTCACC-ATTCACC-ATTCACC-ATTCACC-ATTCACCDesign primers
2726879GAAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTTDesign primers
2727374TCTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGATTCTAGGTTCTAGGTTCTADesign primers
2730133TTCTAGA-ATCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGGDesign primers
2957337CTGGGCTTAGTGCTGGGCGTAGTGCTGGGCTTAGTGCTGGGCTTAGTGCTGGGCTTGGTGDesign primers
3028386TGCTTGAGCGTATTCCTGAAAAAGCTTGAGCGCATTCCTGAAAAAGCTTGAGCGCATTCCTGAAAADesign primers
3324533GCGCTTCATGCTGCTCTTCATGCTGCTCTTCATGCTDesign primers
3420333ACGCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTAT-TCCCTATDesign primers
3420418CCCTATTCCC-CCCTATTCCC-CCCTATTCCADesign primers
3452354TTTTGGTG-TTTTGGTT-TTTTGGTT-TTTTGGTT-TTTTGGTT-TTTTGGTTDesign primers
3523038GTCCTCACTCTTTGC-ATCCTCACTCTTTGC-ATCCTCACTCTTTGC-ATCCTCACTCTTTGCDesign primers
3708088CGTCTAC-CGTCTAC-CGTCTAC-CGTCTAC-CGTCTACDesign primers
3708124GTTTACC-GTCTACC-GTTTACC-GTTTACC-GTTTACC-GTTTACC-GTTTACC-GTTTACCDesign primers
3935431CTGTTTAATGCTGCTTAATGCTGCTTAATGDesign primers
3935644TACCGTT-TACCGTT-TACCGTT-TACCGTTDesign primers
3952799GACTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGG-CTCTGGDesign primers
4026832CGTCTG-GGTCTG-GGTCTG-GGTCTG-GGTCTG-GGTCTG-GGTCTG-GGTCTGDesign primers

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