Microsatellites /Tandem Repeats database

Genome: Prochlorococcus marinus str. MIT 9312

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
16398AATGGC-GGTGGC-TATGGC-GGTGGC-GGTGGC-GGTGGCDesign primers
65588AAGATGATTATG-AAGATGATTATG-AAGATGAAGATGDesign primers
133576GCTGGTAATGTTGCTAGCAATGTTGCAGGCAATGTTDesign primers
172099ATTAAAATAAAACTTAAAAATAAADesign primers
260599AATAAAAATTAAAAGAAAAATAATDesign primers
277397TTTTC-TTTTC-TCTTC-TTTTT-TTTTGDesign primers
327998TGCTGCTGCTGTTGTTGCTGCTGADesign primers
335390TTATTTTATCTTAATTTCTTTTATTDesign primers
342792TA-AA-AA-TC-AA-AA-AA-AA-AA-AA-AA-AADesign primers
356145AAAAATAAAAGAAAAAATAAAAATADesign primers
426324CATCATACCTGGCATGCCCATTCC-TCCCATACCTGGCATGCCCATGCC-TCCCATACCTGGCATGCCCATGCC-TCCCATACCTGGCATGCCCATGCC-TCCCATACCTGGCATGCCCATGCCDesign primers
459904ATGATTTGAATGAGAAGAGTG-ATCGTGTGAATGAGAAGAGTG-ATCGTGTAAATGAGAAGAGTG-ATCGTGTGAATGAGAAGAGTG-ATCGTGTAAATGAGAAGAGTG-ATCGTGTGAATGAGAAGAGTGDesign primers
535121TTTATAATATTTTTTAGTATTTGATATTATDesign primers
537055GTAATAATTAATTAATATTTAATTAATAATTATDesign primers
620274CTTTATTTGACATTTTAGTTGACATTTTTTTTGACATTTTATTTGACTDesign primers
739749TATTTTTTTATTTATTAATTTTTTDesign primers
805944GCATTATTTGCATTATTAGCTTTATTTDesign primers
875927ATTATTTAACTATTTTTTATCTCTTATTTAAATDesign primers
877081AATTTACTTTAATTCAAATTTATTTDesign primers
887733TCAAATTAAATCAAATGAAATCGAADesign primers
923951TTTTTGATTTTGTCTTTGTTTTTGDesign primers
943511ATTTTTATTTTAATTATTTTTTTTAATTTTDesign primers
1000003AATATCAGTATCAATTTCAATATCDesign primers
1056486TTCTTCATCTTCTTCTGCATCTTCATCTTCDesign primers
1097769TAAAAAGATTTTTAAATATATTTTTAAATATATTTTDesign primers
1110936ATAAAA-AGAAAA-AGAAAA-AGAAAADesign primers
1129215TGATGATGATGGAGATGATGATGADesign primers
1138467TTTTTATTTTCTTTTTATTTTGTTTDesign primers
1145721TGCTTTTTTTGTTT-ATCTTTTTTTGTTT-ATCTTTTTTTGTTTDesign primers
1172531AAATTGAAAAATTCAAAAATTAAADesign primers
1211544TTTTAAAATTTTTGAAAATAATTTATAATTDesign primers
1294635TT-TT-TT-CT-TT-TT-AT-TA-TT-TT-TT-TG-TT-TT-TTDesign primers
1294680ACTCATTCCTGACATTCC-TCCCATTCCTGGCATTCC-TCCCATTCCTGGCATTCC-TCCCATTCCTGGCATTCC-TCCCATTCCTGGCATTCC-TCCCATTCCTGGCATTCCDesign primers
1303267GATT-AATT-AATT-AATT-AATT-AATTDesign primers
1317776AAAAACAAAAAAAGAAGAAAAAGAADesign primers
1320691TTTTTA-TTTTTA-ATTTTA-TTTTTA-TTTTCADesign primers
1374212TT-AT-TT-TT-TT-TG-AT-AT-TT-TT-TT-AT-TT-CT-ATDesign primers
1381621AATTTAAATTAAGTTCATTTAACTTDesign primers
1385170TTGATTTTTTTTAATATTTTTTTCTTTTTTDesign primers
1385618ATTTTTATTTAACAAAATTCTTACCTAACAAAATTCTTACCTAACAAADesign primers
1398129ATTA-AATA-AATA-AATA-AATA-AATADesign primers
1418923TGA-TGA-GGA-TGA-AGA-TGA-TGA-CGADesign primers
1456448AAGAATCAGAATAACAATAAGAAGDesign primers
1642288AAAAAAAGTAGAAAAAGTAGAAAAAGTDesign primers
1708767AA-AA-AG-CA-AA-AA-AA-GT-AA-AA-AA-AG-AA-ADesign primers

Please help us improve this resource by reporting problems, suggestions etc.