Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas haloplanktis TAC125

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10893GAAGCACCTAGCAGCACCTAGCAGCACCTADesign primers
166614ATTATTC-ATTATTC-ATTATTC-ATTATTCDesign primers
313265CGCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGADesign primers
330626AACATCC-AACATCC-AACATCC-AACATCCDesign primers
368185AGCTGAAGCTGAGCG-AGCAGAAGCTGAGCG-AGCAGAAGCTGAGCG-AGCAGAAGCTGAGCGDesign primers
393325TCTGATA-CCTGATA-CCTGATA-CCTGATA-CCTGATA-CCTGATADesign primers
410751AGGTATT-AGGTATT-AGGTATT-AGGTATTDesign primers
468679GCTGACA-CCTGACA-CCTGACA-CCTGACA-CCTGACA-CCTGACADesign primers
705003CTGACT-CTGACT-CTGACT-CTGACTDesign primers
819909TGCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAGDesign primers
1024715TTGCCTA-GAGCCTA-GAGCCTA-GAGCCTA-GAGCCTA-GAGCCTA-GAGCCTA-GAGCCTA-GAGCCTADesign primers
1055198TTGAACT-TAGAACT-TAGAACT-TAGAACT-TAGAACT-TAGAACT-TAGAACT-TAGAACTDesign primers
1437102TCACTAGATACTACTTCACTAGATACTTCTTCATTAGATACTACTDesign primers
1618167GATGGTGCT-GATGGTGCT-GATGGTGCTDesign primers
1671432GCTTAGTTATAGCTTAGTTATTACTTAGTTATADesign primers
1680817TTAGGTTTA-TTAGGTTTA-TTAGGTTTA-TTAGGTTTADesign primers
1818327TTAATTC-TTAATAC-TTAATAC-TTAATAC-TTAATAC-TTAATACDesign primers
1820280ATGCTAAAACGCAGTTA-TTGCTAAAACGCAGTTA-TTGCTAAAACGCAGTTADesign primers
2075990AAGCGC-AAGCGC-AAGCGC-AAGCGCDesign primers
2471232GTGCTAGGTGCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGDesign primers
2734908CGTTATTAGTTA-GGTTATTAGTTA-GGTTATTAGTTA-GGTTATTAGTTADesign primers
2753531CTCTAGG-TTCTAGG-CTCTAGG-CTCTAGG-CTCTAGG-CTCTAGGDesign primers
2809936ACCACCGTC-ACCACCGTC-ACCACCGTCDesign primers
2915647TACTTTCTAGTTAGG-TACTTTCTAGTTAGG-TACTTTTTAGTTAGGDesign primers
3079069AGGTATC-AGGTATC-AGGTATC-AGGTATC-AGGTATCDesign primers
3093446AATA-AATA-AATA-AATA-AATA-AATADesign primers

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