This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 249366 | CTAGAAAA-CTAGAAAA-CTAGAAAA-CTAGAAAA-CTAG | Design primers |
| 249403 | AAACTAGG-AAACTAGG-AAACTAGG-AAACTAG | Design primers |
| 290966 | TGCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA | Design primers |
| 291784 | CTAGTCC-CTAGTCC-CTAGTCC-CTAG | Design primers |
| 298258 | CATCCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA | Design primers |
| 335649 | TTTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA | Design primers |
| 336905 | AAACTAG-ACCCTAG-ACCCTAG-ACCCTAG-ACCCTAG-ACCCTAG-ACCCTAG-ACCCTAG-ACCCTAG-A | Design primers |
| 343154 | TAGTACCAG-TAGTACCAG-TAGTACCAG-TAGT | Design primers |
| 349921 | CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-C | Design primers |
| 372030 | CCTAGAAA-CCTAGAAA-CCTAGAAA-CCTAG | Design primers |
| 382774 | TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCC | Design primers |
| 397954 | TTTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC-GCTTCTC | Design primers |
| 414308 | ATGTCCGTGGTCATCATG-ATGTTCGTGGTCATCATG-ATGTTCGTGGTCATCATG-ATGTTCGTGGTCATCATG | Design primers |
| 460219 | AATTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA-GTTTGCTA | Design primers |
| 460292 | TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-TTTTCTAG-T | Design primers |
| 589330 | GTTGATGTCCTTCGGGAGACTGACGTTGAAGTCCTTTGGGAGACTGACGTTGACGTCCTTCGGGAGACTGAC | Design primers |
| 958821 | CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGT | Design primers |
| 958867 | CCTAGTC-CCTAGTC-CCTAGTC-CCT | Design primers |
| 1046943 | TTCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA-ACCTCGA | Design primers |
| 1151133 | CTTGCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAG | Design primers |
| 1151182 | CCCTAGT-CCCTAGT-CCCTAGT-CCCT | Design primers |
| 1162008 | AAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC | Design primers |
| 1367445 | CCGATTC-TCGATTC-TCGATTC-TCGATTC-TCGATTC-TCGATTC | Design primers |
| 1383142 | TTTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA | Design primers |
| 1392008 | TCATAC-TCATAC-TCATAC-TCATAC-TC | Design primers |
| 1977293 | TTCTGATGACAAATCAGA-TTCTGATGACAAATCAGA-TCCTGATGACAAATCAGA-TACTGATGACAAATCAGA-TTCTGATGACAAATCAGA-TTCTGATGACAAATCAGA-TTCTGATGACAAATCAGA-TTCTGATGACAAATCAGA-TTCT | Design primers |
| 2307451 | AGTAGCG-AGAAGCG-AGAAGCG-AGAAGCG-AGAAGCG-AGAAGCG-AG | Design primers |
| 2363746 | GTTTTTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-GGTTCTA-G | Design primers |
| 2417255 | ATGCGAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-AAGCTAGG-A | Design primers |
| 2417335 | AAAAGAGT-AAAAGAGT-AAAAGAGT-AAAAGAGT-AAAAGA | Design primers |
| 2602459 | CTAGATC-CTAGATC-CTAGATC-CTAGATC-CTAGATC-CTA | Design primers |
| 2748490 | GCTTCTTCAGCTTCACGTTTCGCTTTTTCTTCAGCTTCACGTTTCGCTGCTTCTTCAGCTTCACGTTTCGCCGCTTCTTC | Design primers |
| 2839669 | ACGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC-TAGTTTTC | Design primers |
| 2842123 | AGGATTG-AGGATTG-AGGATTG-AGGA | Design primers |
| 2988631 | CTAGGAG-CTAGGAA-CTAGAAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGAA-CTAGGA | Design primers |
| 2988764 | CTAGGGG-CTAGGGG-CTAGGGG-CTAGGGG-CTAGGGG-CTAGGG | Design primers |
| 3060528 | AAACTAGA-AAACTAGA-AAACTAGA-AAACTAGA-AAACTAGA-A | Design primers |
| 3100995 | GGGCCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-G | Design primers |
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