This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 249366 | CTAGAAAA-CTAGAAAA-CTAGAAAA-CTAGAAAA-CTAG | Design primers |
| 249403 | AAACTAGG-AAACTAGG-AAACTAGG-AAACTAG | Design primers |
| 290968 | CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC | Design primers |
| 291784 | CTAGTCC-CTAGTCC-CTAGTCC-CTAG | Design primers |
| 298261 | CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA | Design primers |
| 335651 | TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TA | Design primers |
| 336908 | CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CT | Design primers |
| 343154 | TAGTACCAG-TAGTACCAG-TAGTACCAG-TAGT | Design primers |
| 349921 | CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-CCTAGAA-C | Design primers |
| 372030 | CCTAGAAA-CCTAGAAA-CCTAGAAA-CCTAG | Design primers |
| 382774 | TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCC | Design primers |
| 397956 | TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTCTCGC-TTC | Design primers |
| 414313 | CGTGGTCATCATGATGTT-CGTGGTCATCATGATGTT-CGTGGTCATCATGATGTT-CGTGGTCATCATG | Design primers |
| 460221 | TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TT | Design primers |
| 460296 | CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGTTTT-CTAGT | Design primers |
| 958821 | CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGTTTG-CTAGT | Design primers |
| 958867 | CCTAGTC-CCTAGTC-CCTAGTC-CCT | Design primers |
| 1046945 | CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTCGAAC-CTC | Design primers |
| 1151134 | TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT-TTGCTAGT | Design primers |
| 1151183 | CCTAGTC-CCTAGTC-CCTAGTC-CCT | Design primers |
| 1162009 | AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAA | Design primers |
| 1367446 | CGATTCT-CGATTCT-CGATTCT-CGATTCT-CGATTCT-CGATTCT-CGATTCT-C | Design primers |
| 1383144 | TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-T | Design primers |
| 1392008 | TCATAC-TCATAC-TCATAC-TCATAC-TC | Design primers |
| 1977349 | CTGATGACAAATCAGATT-CTGATGACAAATCAGATT-CTGATGACAAATCAGATT-CTGATGACAAATCAGATT-CTGATGACAAATCAGATT-CT | Design primers |
| 2307454 | AGCGAGA-AGCGAGA-AGCGAGA-AGCGAGA-AGCGAGA-AGCGAGA-A | Design primers |
| 2363751 | TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAG | Design primers |
| 2417260 | AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAAGCT-AGGAA | Design primers |
| 2417338 | AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGA | Design primers |
| 2602459 | CTAGATC-CTAGATC-CTAGATC-CTAGATC-CTAGATC-CTA | Design primers |
| 2839671 | GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTTTTCTA-GTT | Design primers |
| 2842123 | AGGATTG-AGGATTG-AGGATTG-AGGA | Design primers |
| 2988650 | AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG | Design primers |
| 2988770 | GCTAGGG-GCTAGGG-GCTAGGG-GCTAGGG-GCTAGGG | Design primers |
| 3060528 | AAACTAGA-AAACTAGA-AAACTAGA-AAACTAGA-AAACTAGA-A | Design primers |
| 3100998 | CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCG | Design primers |
|
Please help us improve this resource by reporting problems, suggestions etc.