Microsatellites /Tandem Repeats database

Genome: Leisingera methylohalidivorans DSM 14336 strain MB2, DSM 14336

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
54818TGGCGCTGGTGCTGCCGCTGGCGTDesign primers
251704GATCGGGATCTGGATCAGGATCGGDesign primers
281448CATTTCCAGTTCCATTTCCAGTTCDesign primers
282286CGCCCA-TGCCCA-TGCCCA-TGCCCADesign primers
339272CAGCCCAAGCCCCAGCGCCAGCACDesign primers
362930GACTGCGTACAACTGCTTACATCTGCGTACDesign primers
443732GAAATGGCACTGGGAAATGGCACTGCAAAACGGCACTGGDesign primers
450150GATTGATGATGCCGGGGCTGATGATGCCCGGATTGATGATGAAGGDesign primers
517026GTGCTGGCGCTGGTGCTGGCGCTGDesign primers
545532GCCAGC-GCCAGC-ACCAGC-GCCAGCDesign primers
565944TGGCCGGG-CGGCCGGG-CGGCCGGGDesign primers
634911GCTGCGGCT-GCTGCGGCT-GCTGTGGCTDesign primers
765068CGGCGACGGCGCAGGCGACGGCCADesign primers
802406TTTGGCCACCGT-CTTGGCCACCGT-CTTGGCCACTGTDesign primers
835437GCAGGGCGGAGCGGGCCGGAGCGGGGCAGADesign primers
929494CTCATCGCCGGCCTCATCGCTGGCCTCACTGCCGGCDesign primers
948996CCAGCTCCAGTTCCAGCGCCAGCADesign primers
949634GCCAGGCCAAGTGTCAGGCCAAGTATCAGGCCAAGTGCCGGGCCAGGTDesign primers
952771CGACATGGGCGGCATGGGCGGCATGGGDesign primers
964246CTCCCGGCGCGTCCTGGCGCGTCCCGGCGCGTCCCGGCGGDesign primers
969954CTGCCGCGCGGCCGCGCTGCCGCTDesign primers
996854AGTGCGCCCTGGGAAGGTGCGTCCTGGCAACGTGCGGCCTTGGAADesign primers
1003360TGGCAGGCTTGGCGGGCTTGGCAGGCTDesign primers
1036000GCTTCGGCTTCCGCTGCGGCTTCCDesign primers
1042935TGATCCGGCGGCTGATGTTCCGGCGGCTGATGTTCCGGCAGTTGADesign primers
1059728GCCTCCGGCCCGCCAGCCCCTGACCCGCCAGCCTCTGACCCGCCAGCCCCTGACCCGCCADesign primers
1067020GGTC-TGTC-TGTC-TGTC-TGTC-TGTCDesign primers
1070441TCTGCGGCATCTGCGGTATCTGCAGCADesign primers
1070834GCCTCGGTCTCGGCCTCCGGCTCGDesign primers
1070939GTTTCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCT-TCGGCTDesign primers
1079266GCGGCGGCGGCTCCGGCGGCGGCGDesign primers
1085143GCGGGGGCGGGACCGGGGGCGGGGDesign primers
1092668CAGGCCGCAACCGGGCAGCAACCGGGCCGCAAGDesign primers
1136918GGC-GGC-GGC-GGG-GGA-GGC-GGC-GGCDesign primers
1137264CCATTCCCATGCCCATCCCCATGCDesign primers
1189406CGGATTTGCTGATTTGCAGATTTGDesign primers
1210547ACCGGGGGCAACCGGGGGGCAACCGGGGGGCAADesign primers
1221131TGGCATGGGTCTGGCATGGGTTCGGCATGGGGCTGGCATGGGTCDesign primers
1229632CGGGCATCGGGGATCGGGCATCGGGGATDesign primers
1235604TTGGCGACCGC-GTGGCGACCGC-GTGGCGGCCGCDesign primers
1245891GCG-GCG-GCG-ACG-GCG-CCG-GCG-ACGDesign primers
1433115GGCGGCGGCGGGGGCTGCAGCGGCDesign primers
1438312GATCGCGAAGATCCCGAAGATCACGAADesign primers
1587394TGCGCGAAATGCGGGAAATGCGGGAAADesign primers
1693926CAGGGCTGATTTGGGCTGATCCGGGCGGATDesign primers
1773660CCGCCGCTGCCGCCGCTGCTGCCGCCGCTGDesign primers
1802628CTGTCCTGTTTTAAGCCGGGCCGGTTTTAAGCCGGGCCTGTTTTAAGTDesign primers
1809926CCCGCC-CCTGCC-CCTGCC-CCTGCCDesign primers
1810711CCGCGG-CAGCGG-CAGCGG-CAGCGGDesign primers
1824879ACTGCCCTTTCTAAAGCTGGCCTTTCTGAAGCTGGCCTTTCTGAADesign primers
1977305GGTGGTGGCGGCCAGGGTGGCGGCGGCTATGGCGGCGGCAGCCAGDesign primers
2097556CGAAGCCGCGGCAGAACCGGAAGCAGCGGCAGAACCGGAAGACGCCGCAGAACCDesign primers
2457624TCATGGGCGTCATGGACGTCATGGGCTDesign primers
2552407GCCTGC-GCCTGC-GCATGC-GCCTGCDesign primers
2642539GCCGGCA-GCCGGCA-GCCCGCA-GCCGGCCDesign primers
2674722CGGCCTCTGCCTCGGCCGCCGCCTDesign primers
2679281CCGCGGCGGCGGCCCCGGCGGCGGDesign primers
2681994CCCCGCGCCGCCGCGCGGCGCCCCGCCCGGDesign primers
2723085TGGACC-TCGACC-TCGACC-TCGACCDesign primers
2755087CAAGGGGTCCGGCGGTAC-CAAAGGATCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAGGGATCTGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAGGGATCCGGCGGCAC-CAAGGGGTCCGGCGGCAC-CAAGGGATCCGGCGGCAC-CAAGGGTTCCGGCGGCAC-CAAGGGATCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGGTCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAGGGCTCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGGTCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGGTCCGGCGGCAC-CAAAGGATCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAGGGATCCGGCGGCAC-CAAGGGGTCCGGCGGCAC-CAAGGGATCCGGCGGCAC-CAAAGGGTCCGGCGGCAC-CAAAGGGTCCGGCGGCAC-CAAGGGGTCCGGCGGCAC-CAAAGGCTCCGGCGGCAC-CAAAGGGTCCGGCGGCACDesign primers
2755868GGCACAGGTACCGGCGGCTCAGGCACGGGCGGATCAGGTACTGGCGGATCAGGTACCGGCGGCTCGGGTACTGGCDesign primers
2760600ACAAGCTGCGCGAAGAGCTGCGCGACCAGCTGCCCGDesign primers
2908877CCGGCACCGACATCGGCACCGCCACCGGCCDesign primers
2958463GGCGCTGGTGCTGGGGCTGGCGGTDesign primers
2975282CCATCGCCAGCGCGATCGCCAGCGDesign primers
3219877GCTGCA-GCTGCA-GCAGCA-GGTGCADesign primers
3271608GGATGCGGCCTGAGATACGGCCTGGGATGCGCTCTGDesign primers
3384007CCAACGGCAGCAACGGCAACAACGGCADesign primers
3446314CAGCAGCAGCGGCATCAGCACCAGDesign primers
3463129AAATGCCAT-GAATGCCAT-GAATGCCATDesign primers
3475068GATGCTGCTGCTGATCCTGATCCTDesign primers
3475795CGGATCAACTGATCAACTGATCAADesign primers
3524868CCCGCCCCGGCCCCCGCCGCCCCGGDesign primers
3538595CTTTCGCTCCGCTTACTTTGGCTCCGCTGACCTTGGCTCCGCTGADesign primers
3658195CCAATGTTCCTGCGCCATGTTCCTGCGCCATGTTCCTGCDesign primers
3671933TGCCCGTCCCTGTGTCCGTCGCTGTGCCCGTCTCTGDesign primers
4003078CAGTTT-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGA-CCGAGADesign primers
4059167CCAGGGGC-TCAGGGGC-TCAGGGGCDesign primers

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