Microsatellites /Tandem Repeats database

Genome: Leisingera methylohalidivorans DSM 14336 strain MB2, DSM 14336

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
282287GCCCAT-GCCCAT-GCCCAT-GCCCATDesign primers
362931ACTGCGTACAACTGCTTACATCTGCGTACADesign primers
802407TTGGCCACCGTC-TTGGCCACCGTC-TTGGCCACTGTCDesign primers
949636CAGGCCAAGTGTCAGGCCAAGTATCAGGCCAAGTGCDesign primers
952774CATGGGCGG-CATGGGCGG-CATGGGCGGDesign primers
964247TCCCGGCGCGTCCTGGCGCGTCCCGGCGCGDesign primers
1059736CCCGCCAGCCCCTGACCCGCCAGCCTCTGACCCGCCAGCCCCTGADesign primers
1067021GTCT-GTCT-GTCT-GTCT-GTCT-GTCTDesign primers
1070941TTCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTC-GGCTTCDesign primers
1092670GGCCGCAACCGGGCAGCAACCGGGCCGCAAGCGDesign primers
1210548CCGGGGGCAACCGGGGGGCAACCGGGGGGCAACDesign primers
2755094TCCGGCGGTACCAAAGGATCCGGCGGCACCAAAGGATCCGGCGGCACCAAAGGADesign primers
2755199GGATCCGGCGGCACCAAG-GGATCCGGCGGCACCAAG-GGGTCCGGCGGCACCAAG-GGATCCGGCGGCACCAAG-GGTTCCGGCGGCACCAAG-GGATCCGGCGGCACCAAADesign primers
2755308GCTCCGGCGGCACCAAAG-GATCCGGCGGCACCAAAG-GCTCCGGCGGCACCAAAG-GCTCCGGCGGCACCAAAG-GGTCCGGCGGCACCAAAGDesign primers
2755415GGCTCCGGCGGCACCAAA-GGCTCCGGCGGCACCAAA-GGGTCCGGCGGCACCAAA-GGATCCGGCGGCACCAAA-GGCTCCGGCGGCACCAAA-GGGTCCGGCGGCACCAAA-GGATCCGGCGGCACCAAA-GGCTCCGGCGGCACCAAA-GGCTCCGGCGGCACCAAGDesign primers
2755578GATCCGGCGGCACCAAGGGGTCCGGCGGCACCAAGGGATCCGGCGGCACCAAAGDesign primers
2755633GTCCGGCGGCACCAAAGGGTCCGGCGGCACCAAGGGGTCCGGCGGCACCAAAGGCTCCGGCGGCACCAAAGGGTCCGGCGGCACCAAGGGDesign primers
3538612TTGGCTCCGCTGACC-TTGGCTCCGCTGACC-TTGGCACCGCTGACCDesign primers
3658196CAATGTTCCTGCGCCATGTTCCTGCGCCATGTTCCTGCGDesign primers
4003082TTCCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGA-GACCGADesign primers

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