This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
Position | Sequence | |
0 | AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT | Design primers |
5093 | TTCTTAAAG-TTCTTAAAG-TTCTTAAAG | Design primers |
6638 | TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG | Design primers |
91536 | AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA-AAGAATA | Design primers |
96482 | CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT | Design primers |
161867 | AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA-AACAAAAGACAGAACAAGAAA | Design primers |
235266 | AGGGCGTGAAAG-AGGGCGTGAAAG-AGGGCGTGAAAG | Design primers |
241888 | ATGAAAACA-ATGAAAACA-ATGAAAACA | Design primers |
280984 | ATAAATAC-ATAAATAC-ATAAATAC-ATAAATAC-ATAAATAC-ATAAATAC | Design primers |
341990 | TTTAATCTTA-TTTAATCTTA-TTTAATCTTA-TTTAATCTTA-TTTAATCTTA-TTTAATCTTA | Design primers |
396104 | AGAGTTAAAAAAAG-AGAGTTAAAAAAAG-AGAGTTAAAAAAAG-AGAGTTAAAAAAAG-AGAGTTAAAAAAAG | Design primers |
660087 | TTTCTACATCTTGCGGTA-TTTCTACATCTTGCGGTA-TTTCTACATCTTGCGGTA-TTTCTACATCTTGCGGTA-TTTCTACATCTTGCGGTA | Design primers |
940266 | AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG | Design primers |
1099775 | TTTCTTTTTTAAGAA-TTTCTTTTTTAAGAA-TTTCTTTTTTAAGAA-TTTCTTTTTTAAGAA-TTTCTTTTTTAAGAA-TTTCTTTTTTAAGAA | Design primers |
1121230 | TTTAATTCTGTG-TTTAATTCTGTG-TTTAATTCTGTG | Design primers |
1288094 | GACAACGAAAAT-GACAACGAAAAT-GACAACGAAAAT-GACAACGAAAAT-GACAACGAAAAT-GACAACGAAAAT | Design primers |
1298099 | AGAAGTGGTGTGATAT-AGAAGTGGTGTGATAT-AGAAGTGGTGTGATAT-AGAAGTGGTGTGATAT-AGAAGTGGTGTGATAT | Design primers |
1360616 | CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT-CATTCAAT | Design primers |
1413104 | CTCAAATCATCATAATTAACC-CTCAAATCATCATAATTAACC-CTCAAATCATCATAATTAACC-CTCAAATCATCATAATTAACC-CTCAAATCATCATAATTAACC-CTCAAATCATCATAATTAACC | Design primers |
1425359 | AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT | Design primers |
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