Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus Z172

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
43078	AAAAATAAAAAAAGAAAGAAAAAAG	Design primers
132151	TCCGTTGCCGTCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGG	Design primers
132248	TTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGCTTGTTGTTGTCTTCTTTGCCAGGC	Design primers
310103	TTAGTATTATTATTTGTATTATTA	Design primers
344721	GGTGCAAGTGCAGCTGCAGGTGCA	Design primers
481585	AAAGATAAAGAGAAATATAAAGAA	Design primers
483704	GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AA	Design primers
487671	GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA	Design primers
489746	GAAGAAGATGAAGAAGTAGAAGAA	Design primers
637001	ATCAGATAGCGACTCAGA-TTCAGATAGCGACTCAGA-TTCAGACAGCGATTCAGA	Design primers
637056	AGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGAC	Design primers
637242	AGCGACTCAGATTCTGAC-AGCGATTCAGACTCAGAC-AGTGATTCAGATTCAGAC-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCGGAT-AGCGATTCAGATTCAGAC	Design primers
641357	ATCAGATAGCGACTCAGATTCGGACAGCGACTCAGATTCAGACAGAGACTCAGACTCAGATAGTGATTCAGACTCGGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGAGACTCAGA	Design primers
641523	GATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGC	Design primers
641697	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCA	Design primers
645323	TGACTCAGACAGCGACTC-AGACTCAGACAGCGACTC-AGACTCAGACAGTGATTC-AGATTCAGACAGCGACTC-AGATTCAGATAGCGACTC	Design primers
645420	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCA	Design primers
700453	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
741526	AAAATTAATATTAAAAATAAAAAT	Design primers
764579	ATAAAGACAAAGATAAAGATAAAG	Design primers
819270	AAATTTTTTTAAATTTGTTCAAGTTTTTCT	Design primers
886812	TAGTGGTTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGACTCAGCGAGTGATTCAGATTCAGC	Design primers
887005	TCAGACAGTGACTCAGATTCAGATAGCGATTCAGATTCAGATAGCGATTCAGAT	Design primers
887060	CCGACAGTGATTCCGACTCAGACAGCGATTCTGACTCCGACAGTGATTCCGACT	Design primers
887164	GACTCAGATAGCGACTCA-GATTCAGACAGCGATTCA-GATTCAGACAGCGATTCA-GATTCAGATAGCGATTCA	Design primers
887242	GACAGTGACTCAGATTCCGACAGTGACTCGGATTCAGATAGCGATTCAGATTCCGACAGTGACTCAGATTCCGACAGTGACTCAGACTCAGACAGTGATTCGGATTCA	Design primers
887392	GACTCGGATTCAGATAGCGACTCAGACTCGGATAGCGACTCGGATTCAGATAGCGATTCGGACTCAGATAGC	Design primers
887509	AGTGACTCAGATTCAGATAGTGACTCGGATTCAGCGAGTGATTCAGACTCAGGT	Design primers
908600	AAAAGTATAAAAGTTTAAAAGAAT	Design primers
1068634	TCAGGGTTGTTAGGGTTGTCAGGGTTA	Design primers
1075229	TAGGTGTTGGTGTAGGCGTAGGTT	Design primers
1160357	AAGAAGAAGAAAGAGAAGAAGAAT	Design primers
1167205	AAATGACAAAAATGACAGAAATGACGAAAATGACAC	Design primers
1194809	CTTTAACTT-CTTTAACTT-CTTTAGCTT	Design primers
1255204	AAGTTTTTCAAAGTTATTAAAAGTGTTTAA	Design primers
1322753	TATAGAATTATATAATTATAGAAA	Design primers
1439078	CTGCTTCTTCTTCGGCTTCTTCTT	Design primers
1486173	ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTG	Design primers
1518470	AAAAATAAAAAAAGAAAGAAAAAAG	Design primers
1619384	TT-TT-GT-TT-CT-GT-AT-TT-GT-TT-CT-GT-AT-TT-GT	Design primers
1809131	TTCTTTTTTTATCTTTTCTATTCTT	Design primers
1942083	TTTTTTCTTTCTTTTTTTATTTTTC	Design primers
1983456	ATTATATTATAATATTATTATTTT	Design primers
2046407	ACAATTTAATAAACTTTAATAGAATTTTAT	Design primers
2102697	ATATATACAATATACACAATATACACA	Design primers
2139618	TCATTATTATCTTTATTATCATTATTG	Design primers
2139648	GTGTTGGTTTGATGTTGTTTTGATGTTGGGTTG	Design primers
2139689	CTGATGTTGTTTTGATGTTGGTTTGATGTCGTTTTGATGTTGGT	Design primers
2168258	TTTGGATTCGGATTTGGCTTTGGT	Design primers
2168285	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2168363	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2185833	ATT-AGT-ATG-AGT-AGT-AGT-AAT-AGT	Design primers
2201159	ATTTTTATGTATTTTTAAATGTTTTTATAT	Design primers
2242493	TTTCATTTTTTCGATTTTTGTTTTTTAGATTTTTGTTTTTTAGATATTCATTTTTTGGTT	Design primers
2410682	CATGTATCTTGATGCATCTTCAGGTATTTT	Design primers
2511593	ACAATAACTATAACAATTACAACA	Design primers
2529636	TAATATATCAATATATTGATATAT	Design primers
2587514	TTATTATTCGCTTGGTTATTACTTGATTGGTTATTATTTGTTTGG	Design primers
2601631	TTTAAATTAATTTTATGTAATATAA	Design primers
2820138	TTTTTTGACGTTTTTGGTCGTTTCTTGAGG	Design primers
2886671	GAATCGCTGTCTGAATCTGACTCACTGTCTGAATCTGACTCACTGTCTGAGTCTGAATCGCTGTCTGAGTCTGAATCGCTGTCTGAATCTGAGTCACTGTCTGATTCTGAGTCACTGTCTGAGTCTGAATCGCTATCTGAATCTGACTCACTGTCTGATTCTGAATCGCTATCTGAATCG	Design primers
2886852	AGTCACTGTCTGAGTCCGAATCGCTGTCTGAATCCGAGTCGCTATCTGAATCCGAGTCACTGTCTGAATCCG	Design primers
2886925	ATCGCTGTCTGATTCTGAATCGCTGTCTGAATCTGAATCGCTATCTGAATCCGAATCGCTGTCTGAATCTGA	Design primers
2886998	TCACTATCTGAGTCCGAGTCACTATCTGAATCCGAGTCACTATCTGAATCCGAA	Design primers
2887053	CGCTGTCTGAATCTGACTCACTGTCTGAACCTGAGTCACTGTCTGAATCCGAAT	Design primers
2887130	TCTGAGTCCGAGTCACTGTCTGAATCTGACTCACTGTCTGAGTTTGAGTCACTATCTGAGTCCGAGTCACTATCTGAGTCCGAGTCACTGTCTGAGTCCGAATCGCTG	Design primers
2887304	TCGCTATCTGAATCTGAGTCACTATCTGAGTCCGAGTCACTGTCTGAATCTGAC	Design primers
2887376	TCACTATCTGAGTCTGAGTCACTATCTGAATCCGAATCGCTATCTGAACCTGAGTCGCTGTCTGAGCCTGAGTCACTATCTGAATCCGAA	Design primers
2899311	ATCTAATCCGAATCAATCAAATTCAAATCAATCAAATTCAAATCA	Design primers
2940999	TTCT-TTAT-TTAT-TTAT-TTAT-TTAT	Design primers
2981387	TTTTTTCTTTCTTTTTTTATTTTTC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

43078

AAAAATAAAAAAAGAAAGAAAAAAG