Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes J1816

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
2054GCATGTACATGTACATGTGCAAGTDesign primers
163559AAATAAACGGAAATAACCGAAAAAGAACGGDesign primers
352848ATTAATTATATTTAATTATCATTTATCATADesign primers
424788AA-AA-AC-AC-AA-AA-AA-AT-AC-AA-AA-AA-AG-AA-AADesign primers
465959TGTGTATCTTTTGGTGTATTTTTTGGTGTATCTTTTDesign primers
545192TAACTGGGTCTGGATCAACTGGATCTGGATTTACTGGATCCGGATDesign primers
584095TTTTTCTGCTTTATCTGCTTTTTCTACDesign primers
785163CAAGCAACAAAAACAGCAACAAAACAAGCAACAAAADesign primers
813390TATGAAAAAACGATGAAAAAGCTTTAAAAAAACDesign primers
839619AATAAGGAAAATAAAGGAAAAATCTGGAAADesign primers
903387TTG-GTT-CTT-CTT-TTG-GTT-CTT-CGA-TTT-TTT-CTT-CTTDesign primers
969125GGCGGTATTGGTGTTGGTGGCACTGGTGTT-GGTGGTACTGGTGTTGGTGGCACTGGTGTT-GGTGGTACTGGTGTTGGTGGCACTGGTGTT-GGTGGCACTGGTGTTDesign primers
1038170TCTTTTGTTGTTTCATTTGCTGTTTCTTTAGCTGTTDesign primers
1321354ATTGTTTTTGTTATTGGTGTTGTTDesign primers
1400408AATAAAAATAAAATAAAAGTTAAATTAAAAGAADesign primers
1443694GATGAAGACGAAGATGACGATGATDesign primers
1606204TAAAAAAGTAAAATAGTAAAAGAGDesign primers
1618738AAGAAACATTAATAAACAATAAGAACCTTTDesign primers
1672208AAGCAAAAGCAGAAGGAAAAGCAADesign primers
1691213AAATGAACAACAGACGAACAACAAACGAACAACAGATGTACAACDesign primers
1691271AATAAAGATAATAAAGAGAAGAAAGATAATAAAGATDesign primers
2080239AGAAAAAGCTGCGGCTGACAAAGCTGCTGCCGAGAAAGCTGCTGCDesign primers
2226358GGATGCCGACGCTGACGCCGATGCTGACGCTGATGCGGATGCCGACGCTGATGCDesign primers
2226419GATGCG-GATGCT-GACGCC-GATGCT-GACGCT-GATGCC-GACGCC-GATGCG-GATGCG-GATGCG-GATGCT-GACGCT-GATGCT-GATGCC-GACGCT-GATGCG-GATGCG-GATGCG-GATGCC-GACGCC-GACGCT-GATGCT-GACGCC-GATGCTDesign primers
2226564ACGCCG-ATGCGG-ATGCTG-ACGCTG-ACGCCG-ATGCTG-ACGCCG-ATGCGG-ATGCTG-ACGCCG-ACGCCG-ACGCTGDesign primers
2226637TGCTGA-CGCTGA-TGCTGA-TGCTGA-TGCTGA-CGCTGADesign primers
2226674GCCGATGCTGATGCTGACGCCGACGCTGATGCTGACGCTGATGCTGATGCTGATGCTGATGCGGATGCCGACDesign primers
2226747CTGATG-CCGACG-CTGATG-CTGATG-CTGATG-CGGATGDesign primers
2226785GACGCTGATGCCGACGCTGATGCGGATGCCGACGCTGATGCGGACGCCGACGCTDesign primers
2226851GATGCG-GATGCC-GACGCT-GATGCT-GACGCC-GATGCT-GACGCT-GATGCG-GATGCT-GATGCT-GATGCT-GACGCTDesign primers
2226956GCGGAC-GCTGAT-GCGGAT-GCCGAC-GCTGAT-GCGGAC-GCTGAT-GCTGAT-GCTGATDesign primers
2227013GATGCC-GACGCT-GATGCT-GATGCT-GATGCT-GACGCC-GATGCT-GACGCT-GATGCG-GATGCTDesign primers
2227074ACGCCG-ATGCGG-ATGCGG-ACGCTG-ATGCGG-ATGCCG-ACGCTG-ATGCGG-ATGCCG-ACGCTG-ATGCTG-ATGCTG-ATGCTG-ATGCTG-ATGCGGDesign primers
2227232GCTGAT-GCGGAT-GCCGAC-GCTGAT-GCGGAC-GCTGAT-GCCGAC-GCTGAT-GCTGAT-GCTGAT-GCGGAT-GCGGATDesign primers
2227347CCGATG-CGGATG-CCGACG-CCGATG-CGGATG-CTGACG-CCGATG-CCGATG-CGGATGDesign primers
2227412GCCGATGCGGATGCGGATGCCGATGCCGACDesign primers
2227799GATGCCGACGCTGATGCG-GATGCCGACGCTGATGCG-GATGCGGATGCCGATGCGDesign primers
2651810GTGTTGGTGGTGGTATTGGTATTGDesign primers
2728292AAATTA-AAATTA-ATATTA-ATATTADesign primers
2777565TTGGTGTTGGATTTGGCGTCGGATCTGGTGTTGGATTTGGCGTTGGGTDesign primers
2925742GGGTCTACT-GGGTCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACC-GGATCTACCDesign primers

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