Microsatellites /Tandem Repeats database

Genome: Mannheimia haemolytica D153

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
8950ACAGGGGATTTTTGTCTCT-GCAGGTGGTTTTTGTCTCT-GCAGGTGGTTTTTGTCTCT-GCAGGTGGTTTTTGTCTCTDesign primers
101419GCATAGGACA-ATATAGGACA-ATATAGGACADesign primers
103844TTAGGGAAA-ATAGGGAAA-ATAGGGAAADesign primers
126761AATCGGTTATTATCTGTTATTGTCGGTTATDesign primers
155927GACGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAA-ACTGGCGAADesign primers
191332GAAATAATTTCAAACAATTTAAAATAATTADesign primers
256720TTAAGTCATTTAATTCATTTAATTCATDesign primers
257167AGCTGTC-GGCTGTC-GGCTGTC-GGCTGTCDesign primers
331411CCGGTCGTGCCGGTCGTTCAGGTCGTGDesign primers
410349CGGA-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTTDesign primers
514644TTGGC-AAGGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGCDesign primers
559267TAATTGTATTACCAGTAATTGTCGTACCTGTAATTGTACCAGCAGDesign primers
596056TAGCTTGTAAGTTAGCTTATAAGTTTACTTGTAAGTDesign primers
613760TGCCA-AACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAGDesign primers
613950CAGCC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCACDesign primers
639796CCTGCTGCATTT-GCTGCTGCATTT-GCTGCTGCGTTT-GCTGCTGCGTTTDesign primers
648285CATTCCGCCCATTCCCCCCATACCGCCDesign primers
684178ATA-ATA-ATA-CTA-ATT-ATA-AAA-ATA-ATA-ATG-ATC-ATADesign primers
794621GCACAAAATGTTCCTCAGGCACAAAATGCCTCTCAGGCACAAAATGCCCCTCAGGCACAAAATGCTCCTCAGGCACAAAATGCTCCTCAGDesign primers
794712TGGAAAATGCTCCTCAGGCACAAAATGCTCCTCAGGTAGAAAATGCTCCTCAAGDesign primers
928551TATGAT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCTDesign primers
928648CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCTDesign primers
1230802CTTTACCATCTTTTCCATCTTTTCCATDesign primers
1289828GGTGGTGATGGTGGCGATGGTGGTGATDesign primers
1390297CTGACTGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGTDesign primers
1424868AAAATCTGCAAAACTTTGCAAAACTTTGCADesign primers
1425929AAGCTACAAAAAACAACAAAAAACAACAAADesign primers
1520019TACT-GAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1572742TAAAATAGAATCAAATAAAATAAACDesign primers
1591882CGTG-TCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAADesign primers
1688181TTTGTGATTGTTTATGATTGGTTTTGATTGDesign primers
1706654TCCGGTATTAAC-CTCGGTATTAAC-CTCGGTATTAACDesign primers
1720973AGTTGGTAGTAGTAAGTAGTAGTAAGTAGTAGTAAGTAGTAGTAAGTAGTAGTTGGTAGTAGTTGGTAGTAGTTGGTAGTAGTTGGTAGGDesign primers
1723060CACT-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
1732979TTTTTAAAGTCTCTTTAAACTCATTTTAAAGTADesign primers
1756373GTTTAAAACAGATTTAAAATAGTTTTAAAACCGDesign primers
1761439CAGCAGCGGCAGCAGTAGCAGCAGDesign primers
1814035TATG-CCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1878840GAGTTAAAAAAAACTGAA-GAGGATAAAAAAACTGAA-GAGGATAAAAAAACTGAA-GAGGATAAAAAAACTGAADesign primers
1907030GT-TT-TG-TT-AA-TT-TT-TT-GT-TG-AT-GT-TT-TG-TT-TT-TDesign primers
1959835TAAATTCAATAAAATTTAATAAAATDesign primers
1973981ATAGAAATGTATAGATTTGTATAGAGTTGTDesign primers
2136348ATTTAAACGCTGTTAAACGCATTTAAACGGDesign primers
2154748CTAA-ACAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAGDesign primers
2229616AATTTCACTATTCACTATTCACTATTCACTATTCACTATTCACTATTCACTATTCACTATACADesign primers
2335390TTTTTGTTTTTTCTTTTGTTCTTTTDesign primers
2376523TGATTTGTTTTGATTGGATTTGATTDesign primers
2432062AAAAATAAAGATCAAAATAAAAACDesign primers

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