Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus CA-347

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
134565	CGTTGCCGTCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGTT	Design primers
134638	TTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGTTGTCTTCTTTACCAGGTTTGTTGTTGTCTTCTTTACCAGGTTT	Design primers
313556	TTAGTATTATTATTTGTATTATTA	Design primers
346430	AAAGAAATGAAAAAAGAAGATAAGA	Design primers
454939	CATCCAAACCCTCCAAACCCTCCAAAC	Design primers
477443	AA-CA-TA-AG-CA-TA-AA-TA-TA-AA-GA-TA	Design primers
571819	TTAAAATTACAAGTAAAAATAAAA	Design primers
617970	CATCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAG	Design primers
618025	TTCAGACAGCGATTCAGATTCGGATAGCGATTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGATAGTGATTCAGACTCAGACAGCGATTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGATAGTGATTCAGACTCAGACAGCGATTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGACAGCGATTCAGATTCGGACAGCGATTCAGATTCAGACAGCGACTCCGA	Design primers
622359	ATCAGATAGCGATTCAGACTCAGACAGTGATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGTGATTCAGATTCGGATAGCGACTCAGA	Design primers
622486	AGCGACTCAGATTCAGAT-AGCGACTCAGATTCAGAC-AGCGATTCAGATTCAGAT-AGCGATTCAGATTCAGAT-AGCGACTCAGACTCAGAC	Design primers
622579	GATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGTGATTCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGTGATTCGGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGT	Design primers
622960	TCAGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGACTCAGACAGTGATTCAGACTCAGATAGTGATTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAT	Design primers
626508	CATCAGATAGCGATTCAG-ACTCAGATAGCGATTCAG-ACTCAGATAGTGATTCAG	Design primers
626572	CGACTCAGACAGCGATTCAGACTCAGACAGTGACTCAGATTCAGATAGCGATTC	Design primers
626627	GATTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGATAGTGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGTGATTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGC	Design primers
626807	GACTCAGATTCAGATAGCGATTCGGACTCAGATAGC-GACTCAAATTCAGACAGTGATTCAGATTCAGATAGC-GACTCAGACTCAGATAGCGACTCAGATTCAGACAGT-GACTCAGACTCAGATAGCGACTCAGATTCAGACAGT-GATTCAGACTCAGAAAGCGACTCAGATTCAGATACA	Design primers
674009	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
738321	AAAGACGAAGACAAAGATAAAGAG	Design primers
861796	TCAGATAGTGATTCAGATTCAGCGAGTGATTCAGATTCAACGAGTGATTCAGATTCAGCGAGTGATTCAGATTCAGCAAGCGATTCAGATTCAGATAGTGACTCAGACTCAAACAGCGATTCAGATTCAGATAGTGACTCAGACTCAGATAGCGATTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGAT	Design primers
862030	TCAGACAGTGACTCAGAT-TCAGATAGCGATTCAGAT-TCAGACAGCGACTCAGAC-TCAGACAGTGACTCAGAT-TCAGACAGTGACTCAGAT-TCAGATAGCGATTCAGAT-TCAGACAGCGACTCAGAC-TCAGACAGTGACTCAGAT-TCAGACAGTGATTCAGAC-TCAGACAGCGACTCAGAC	Design primers
862228	TCAGCGAGCGATTCAGATTCAGCAAGTGATTCAGACTCAGATAGCGACTCAGAT	Design primers
862333	GATTCAGCGAGTGATTCCGATTCAGCGAGTGACTCCGATTCAGATAGCGATTCC	Design primers
862412	ACAGTGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCCG	Design primers
862467	CAGCGATTCAGATTCGGATAGCGATTCAGATTCAGACAGCGATTCAGACTCAGA	Design primers
1022543	TTGTTAGGATTGTCCGGATTATTAGGGTTGTCTGGATTGTTAGGATTATCAGGG	Design primers
1099907	TTTTTGTTTATTGTTTGTTGTTTATTGT	Design primers
1106730	CTTTAACTT-CTTTAACTT-CTTTAGCTT	Design primers
1232428	TATAGAATTATATAATTATAGAAA	Design primers
1312513	AGTGAACAACAGTGTGAACAAAAGAATGAACAACAGAGTGAACAAAAG	Design primers
1352572	TATTAAAGAATATGAAATAATAGAAAAGAA	Design primers
1401895	TTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGA	Design primers
1476588	ATTTTGTGAATTTTGAGAATTTTGTGT	Design primers
1766177	TTCTTTTTTTATCTTTTCTATTCTT	Design primers
1861337	ACATTCATA-TCATTCATA-TCATTCATA	Design primers
1908748	AATAATAATAGTAATCATAACAAT	Design primers
2005826	TGTTGATTTGT-TGTTGATTTGT-TGTCCATTTGT-TGTCCATTTGT-TGTTGATTTGT-TGTTGATTTGT	Design primers
2075928	ATATATACAATATACACAATATACACA	Design primers
2112295	TCATTATTATCTTTATTATCATTATTG	Design primers
2112325	GTGTTGGTTTGATGTTGTTTTGATGTTGGGTTG	Design primers
2112366	CTGATGTTGTTTTGATGTTGGTTTGATGTCGTTTTGATGTTGGT	Design primers
2135479	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2158687	AATTT-AATTT-AATTT-ATTTT-ATTTT	Design primers
2274599	TTGTCCAGCTGGTTGTGTTGTTCCTGCTGCTGGTTGTGTTGTTCCTGCTGCTGGTTGTGTTGT	Design primers
2285319	TATTTATTTTATATTGTTTTTATAGTTATTTCA	Design primers
2336257	ACTCAGGGGTAACTAAAGGGTAACTAAAGGGTA	Design primers
2338406	TTTCATATGGTTTCATAAAGTTTCATATCA	Design primers
2406507	AACTACAACGACTACAACAACTACGACAACTACATC	Design primers
2420717	TAATATATCAATATATTGATATAT	Design primers
2432768	ATCAGCATTTCTATGATCAGTACTTCTAAGGGCAGCGTTTCTATG	Design primers
2458778	ACTTTATCACCTTTATCAAGTTTATCA	Design primers
2471920	TTTGTATTTTTATTTGTATTTCTA	Design primers
2493136	TTTAAATTAATTTTATGTAATATAA	Design primers
2687219	TATTTTAAATTTTATATTTTTTATTTTT	Design primers
2752174	TCGGAGTCGCTATCTGAGTCCGAATCGCTGTCTGAGTCTGAGTCGCTATCTGAATCCGAATCGCTATCTGAA	Design primers
2752252	TCACTGTCTGAGTCTGAATCGCTGTCTGAATCCGAATCGCTGTCTGAATCTGACTCACTGTCTGAGTCCGAA	Design primers
2752327	CTATCTGAATCCGAATCGCTATCTGAATCTGAGTCACTGTCTGAGTCTGAATCGCTGTCTGAATCCGAATCG	Design primers
2752438	TCTGAATCTGACTCACTGTCTGAGTCTGAATCGCTGTCTGAATCGGAGTCGCTG	Design primers
2752540	TCGCTGTCTGAATCCGAATCGCTATCTGAATCGGAGTCACTGTCTGAGTCTGAATCGCTGTCTGAATCCGAATCGCTGTCTGAATCTGACTCGCTGTCTGAATCTGACTCACTGTCTGAGTCCGAATCGCTATCTGAATCTGACTCACTGTCTGAGTCTGAATCGCTGTCTGAATCGGAGTCGCTGTCTGAATCCGAATCGCTGTCTGAATCTGACTCACTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCACTGTCTGAGTCTGAATCGCTGTCTGAATCCGAATCGCTGTCTGAATCCGAATCGCTATCTGAATCTGAA	Design primers
2752891	GAATCTGAGTCGCTATCTGAGTCCGAATCGCTATCTGAATCGGAGTCACTGTCTGAATCCGAATCGCTGTCTGAATCTGACTCACTATCTGAGTCTGAATCGCTACCTGAGTCTGAATCGCTGTCTGAATCTGACTCACTATCTGAGTCTGAATCGCTACCTGAGTCTGAATCGCTGTCT	Design primers
2753090	GGTCTGGGCTTGGTTCTGGGTCTGGACTTGGTTCTGGGTCTGGGCTTGGCTCTGGATCTGGCGTTGGTTCTG	Design primers
2764976	ATCTAATCCGAATCAATCAAATTCAAATCAATCAAATTCAAATCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

134565

CGTTGCCGTCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGTT