Microsatellites /Tandem Repeats database

Genome: Psychromonas sp. CNPT3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
115634ATTATTTAATCTTTTTTAATCTTTTTTAATDesign primers
155827TAATAG-TAAAAG-TAAAAG-TAAAAGDesign primers
211366ACGAGATCACGA-TGATGATCACGA-TGATGATCACGA-TGATGATCACGA-TGATGATCACGA-TGATGATCACGA-TGATGATCACGA-TGATGATCACGADesign primers
281687TTGATTAAATTTAATTAAACTCAATTAAATDesign primers
366312TT-TT-TT-TT-TC-TG-TT-TT-TA-TT-TT-TA-TDesign primers
379922TGGCACATG-TTTTACATG-TTTTACATG-TTTTACATG-TTTTACATG-TTTTACATGDesign primers
412146AGATGAAGATGCAGAAGAAGATAADesign primers
446957TTTTTTTTGTTTTATTTTTATTGTTDesign primers
490567GAAAAAAAACAAAAAAAACAAAAAAAADesign primers
509431AATTGTT-GATTGTT-GATTGTT-GATTGTT-GATTGTTDesign primers
529813GGA-TGG-TGG-CGA-TGG-TGG-TGA-TGG-TGGDesign primers
541814TCTCTGTTTA-TCTCTGTTTA-TCTCGTTTTADesign primers
578340TTT-GAT-TTT-TTT-TGG-TTT-TTT-TTT-CTT-TTTDesign primers
590415TTTTTAT-TTTTTAT-TGTTTAT-TATTTATDesign primers
652923GCATAA-CCATAA-CCATAA-CCATAADesign primers
666722TATTGATGATGCACG-TATTGAAGCTGCACG-TGTTGAAGCTGCACG-TGTTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGCACG-TATTGAAGCTGAACG-TATTGAAGCTGAACG-TATTGAAGCTGAACG-TATTGAAGCTGAACG-TATTGAAGCTGAACGDesign primers
667004ACGCATAGAAGCTGAACGCATAGAAGCCTCGCTCCTAGAAGCTGAGCGCATTGAAGCTGADesign primers
677983TTTTTGTTTTTCGTCTTTTGTTTTTTCTDesign primers
704115CACATAGTATTCATAAACATAGCATTGATAAGCATAGTATTGATADesign primers
704571TT-TT-GT-TT-TT-GG-TT-TT-AT-TT-TT-GTDesign primers
712781TAAAAACA-TAAAAACA-TGAAAACADesign primers
756279GCACCTGTT-GCACCTGTT-GCAACTGTTDesign primers
775922TATGATATC-TGTGATATC-TGTGATATC-TGTGATATCDesign primers
804393CA-TT-TT-CT-TT-TT-CT-TT-TT-CT-TT-TTDesign primers
827366GTAAAAAGTGGTGAAAAGTGGTGTAAAGTGDesign primers
843159TGT-TGG-TGT-CGG-TGG-TGG-TGG-TGGDesign primers
950889TTATATAG-GTATATAG-GTATATAG-GTATATAG-GTATATAGDesign primers
1007091ATAGTTAAGCACCGTAT-TAAGTTAAGCACCGTAT-TAAGTTAAGCACAGTATDesign primers
1017526TTTTTTATTTTTCTTTTGTTTTTTGTTTTCDesign primers
1180603TTTTAATTAATATTAATTAAGGTTAATTAADesign primers
1231244ACTTCAGGCGCAGCAACA-ACTTCAGGTGTGGCAACA-ACTTCAGGTGTGGCAACA-ACTTCAGGTGTGGCAACA-ACTTCAGATGCAGCAACC-ACTTCAGGTGCGGCAACADesign primers
1231356CTGGTGTGGCAACAACTTCAGGTGTGGCAACCACTGCAGGTGCAGCAACAACTTCAGGTGTGGCAACCACTTCAGGTGCGGCAACCACTTCAGGTGCGGCAACAACTTDesign primers
1232179ATTACG-ATTACG-ATTGCG-ATTACGDesign primers
1234166TATTTTGATTATTTTAATTATTTTGATDesign primers
1250626ACCTTTA-ACCTTTA-ACCATTA-ACCATTA-ATCTTTA-ATCTTTA-ATCTTTADesign primers
1259261GCCATA-CCCATA-CCCATA-CCCATADesign primers
1302870TTTTTTTTTGTTGTTTATTTGTTTTDesign primers
1310648TAAAATAAAGTTAAATAAACAAAAADesign primers
1422199AAGAATAG-AATAATAG-AATAATAG-AATAATAGDesign primers
1438949ATTATC-CTTATC-CTTATC-CTTATCDesign primers
1478780GTTTGTTGTTGATGTGTTGTTGGTGTGTTGTAGDesign primers
1485243ACAACACTCTCCT-ACAACACTCTCCT-ACAACTCTCGCCTDesign primers
1594594ACATTTATTATTTA-ACATTTATTATTTA-ACATTTACTATTTADesign primers
1607784TGTTGTTGAGGTGTTACTGAGGTGTTGTTTAGGDesign primers
1662725ACAACAAAACAATAAAACAATAAADesign primers
1680259CATATTTA-CTTATTTA-CTTATTTA-CTTATTTADesign primers
1681456CCTCTATTAACACAA-CCTTAAATAACACAA-CCTTAAATAACACAA-CCTTAAATAACACAADesign primers
1690548ATT-AAT-AAT-AAT-ATT-ATT-ATT-AATDesign primers
1704983ATAGAAATATAGAAATGTGAAAATGTAGAAATGTAGAAATGTAGAAATGTAGAAATGTAGAAATGTGAAAATGTAGAAATGTGAAAATGTGAAAATGTAGAAATGTAGAAATGTAGAAATDesign primers
1705104TGAAAATG-TAGAAATG-TAGAAATG-TAGAAATG-TAGAAATG-TAGAAATGDesign primers
1973184ATCTTCCCCCTTAACGTTACCCTTAACGTTGCCCTTAACGTTACCCTTAACGTTGCCCTTAACGTTACCCTTDesign primers
1992429ATCGGTATCTGTATCGCTATCTGTATCGCTDesign primers
1997248TATCATCTATCTCATCTATGTCATCTADesign primers
2003616TAAAA-TAAAA-AACAA-TAAAA-AACAA-TAAAADesign primers
2012100AATAAC-CATAAC-CATAAC-CATAACDesign primers
2038148TTTAATCA-CTTAATCA-CTTAATCADesign primers
2043644AAAAAATCATATA-TAAAAATCATATA-TAAAAATCACATADesign primers
2070675TTGTTTACAACAA-AAGTTTACAACAA-AAGTTTACAACAADesign primers
2149647CTATTGTTGCTTTTGTTGCTATTGTTTDesign primers
2159336TTTCAATTTCAGCTTCAATTTCAADesign primers
2206913CATCTTCCACGCGTTTAACTTCTGCTACGCGTTTAACTTCTGCTACGCGTTTAADesign primers
2240801TTTAATATTTAACATTTAACATTTAATCDesign primers
2266383GAAGATGAATATGACGATGAAGAADesign primers
2359327TTAACTTAAGTTTGTCTTAAGTTAACCTTAAGTDesign primers
2393081ATAAATAATTTAATAAACAATTTAACAAACAATTTADesign primers
2440091ATAAAA-CGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAATDesign primers
2457165CAA-CAT-CAA-CAA-CAT-CAC-CAA-CAG-CAADesign primers
2471586TAATTATAAATAATAAAAAATACTTACAAADesign primers
2486991AACTAGCTCATTAGCAACTAGCTCATTAGTAACTGGCTCATTGACDesign primers
2565299TTAGCAGTAAAATGTTACCAAATAGTGGCAAAATGTTACCAAATAGTAGAAAAATGTTACTAADesign primers
2565545ATCTAATT-GTTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATT-ATTAGATTDesign primers
2582546TTA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
2590221GTTTTATTGCTTTATTGCTTTATTDesign primers
2658882ACATTTAAG-ACGTTTAAG-ACGTTTAAG-ACGTTTAAGDesign primers
2827037CGTAAAAAAAGCATAAAAGAAGCATAAAAAAAGDesign primers
2827231AAAAACACATAAAAAAGGCATAAAAAAGGCATADesign primers
2863146TAT-TAT-CAT-TAT-CAT-TAT-CAT-TATDesign primers
2951706GTAAAA-GCAAAA-GTAAAA-GTAGAA-GTAAAADesign primers
3007536AAATTCAAATTGTAATTCAAATTGDesign primers

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