Microsatellites /Tandem Repeats database

Genome: Psychromonas sp. CNPT3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
211368GAGATCACGATG-ATGATCACGATG-ATGATCACGATG-ATGATCACGATG-ATGATCACGATG-ATGATCACGATG-ATGATCACGATG-ATGATCACGATGDesign primers
379925CACATGTTT-TACATGTTT-TACATGTTT-TACATGTTT-TACATGTTT-TACATGTTTDesign primers
490568AAAAAAAACAAAAAAAACAAAAAAAACDesign primers
509432ATTGTTG-ATTGTTG-ATTGTTG-ATTGTTG-ATTGTTGDesign primers
652924CATAAC-CATAAC-CATAAC-CATAACDesign primers
666731TGCACGTATTGAAGC-TGCACGTGTTGAAGC-TGCACGTGTTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGCACGTATTGAAGC-TGAACGTATTGAAGC-TGAACGTATTGAAGC-TGAACGTATTGAAGC-TGAACGTATTGAAGCDesign primers
666987GAACGCATAGAAGCT-GAACGCATAGAAGCT-GAACGCATAGAAGCCDesign primers
775924TGATATCTG-TGATATCTG-TGATATCTG-TGATATCTGDesign primers
950890TATATAGG-TATATAGG-TATATAGG-TATATAGGDesign primers
1007093AGTTAAGCACCGTATTA-AGTTAAGCACCGTATTA-AGTTAAGCACAGTATTADesign primers
1231255AGCAACAACTTCAGGTGT-GGCAACAACTTCAGGTGT-GGCAACAACTTCAGGTGTDesign primers
1231417GGCAACCACTTCAGGTGC-GGCAACCACTTCAGGTGC-GGCAACAACTTCAGGTGCDesign primers
1259262CCATAC-CCATAC-CCATAC-CCATACDesign primers
1422202AATAGAAT-AATAGAAT-AATAGAAT-AATAGAATDesign primers
1478783TGTTGTTGATGTGTTGTTGGTGTGTTGTAGATGDesign primers
1594581TATTTATTATTTAA-CATTTATTATTTAA-CATTTATTATTTAADesign primers
1680261TATTTACT-TATTTACT-TATTTACT-TATTTACTDesign primers
1681461ATTAACACAACCTTAAATAACACAACCTTAAATAACACAACCTTADesign primers
1704992TAGAAATGTGAAAATGTAGAAATGTAGAAATGTAGAAATGTAGAAATGTAGAAATGTGAAAATGTAGAAATGTGAAAATGTGAAAATGTAGAAATGDesign primers
1705107AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAGDesign primers
1973188TCCCCCTTAACGTTACCCTTAACGTTGCCCTTAACGTTACCCTTAACGTTGCCCTTAACGTTACCCTTAACGDesign primers
2003617AAA-ATA-AAA-AAC-AAT-AAA-AAA-CAA-TAA-AAADesign primers
2043645AAAAATCATATAT-AAAAATCATATAT-AAAAATCACATATDesign primers
2070676TGTTTACAACAAA-AGTTTACAACAAA-AGTTTACAACAAADesign primers
2206919CCACGCGTTTAACTTCTGCTACGCGTTTAACTTCTGCTACGCGTTTAACTTCTGDesign primers
2440097CGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAATDesign primers
2565549AATTGTTA-GATTATTA-GATTATTA-GATTATTA-GATTATTA-GATTATTA-GATTATTA-GATTATTA-GATTATTADesign primers
2582548ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
2658885TTTAAGACG-TTTAAGACG-TTTAAGACGDesign primers
2827237ACATAAAAAAG-GCATAAAAAAG-GCATAAAAAAGDesign primers
2863147ATTATC-ATTATC-ATTATC-ATTATCDesign primers

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