Microsatellites /Tandem Repeats database

Genome: Psychromonas sp. CNPT3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
211370GATCACGATGAT-GATCACGATGAT-GATCACGATGAT-GATCACGATGAT-GATCACGATGAT-GATCACGATGAT-GATCACGATGAT-GATCACGATGATDesign primers
379926ACATGTTTT-ACATGTTTT-ACATGTTTT-ACATGTTTT-ACATGTTTT-ACATGTTTTDesign primers
490568AAAAAAAACAAAAAAAACAAAAAAAACDesign primers
509432ATTGTTG-ATTGTTG-ATTGTTG-ATTGTTG-ATTGTTGDesign primers
652924CATAAC-CATAAC-CATAAC-CATAACDesign primers
666769TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTA-TTGAAGCTGCACGTADesign primers
666920TGAAGCTGAACGTAT-TGAAGCTGAACGTAT-TGAAGCTGAACGTAT-TGAAGCTGAACGTATDesign primers
666981GAAGCTGAACGCATA-GAAGCTGAACGCATA-GAAGCTGAACGCATADesign primers
775924TGATATCTG-TGATATCTG-TGATATCTG-TGATATCTGDesign primers
950890TATATAGG-TATATAGG-TATATAGG-TATATAGGDesign primers
1231256GCAACAACTTCAGGTGTG-GCAACAACTTCAGGTGTG-GCAACAACTTCAGGTGTGDesign primers
1259262CCATAC-CCATAC-CCATAC-CCATACDesign primers
1422202AATAGAAT-AATAGAAT-AATAGAAT-AATAGAATDesign primers
1594582ATTTATTATTTAAC-ATTTATTATTTAAC-ATTTATTATTTAACDesign primers
1680261TATTTACT-TATTTACT-TATTTACT-TATTTACTDesign primers
1681463TAACACAACCTTAAA-TAACACAACCTTAAA-TAACACAACCTTAAADesign primers
1705003AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAGDesign primers
1705075AAATGTAG-AAATGTAG-AAATGTAGDesign primers
1705107AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAG-AAATGTAGDesign primers
2003619AATAAAAAAC-AATAAAAAAC-AATAAAAAACDesign primers
2070677GTTTACAACAAAA-GTTTACAACAAAA-GTTTACAACAAAADesign primers
2206921ACGCGTTTAACTTCTGCT-ACGCGTTTAACTTCTGCT-ACGCGTTTAACTTCTGCTDesign primers
2440098GAAATA-GAAATA-GAAATA-GAAATA-GAAATA-GAAATA-GAAATA-GAAATADesign primers
2565554TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTA-TTAGATTADesign primers
2582548ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
2658885TTTAAGACG-TTTAAGACG-TTTAAGACGDesign primers
2863147ATTATC-ATTATC-ATTATC-ATTATCDesign primers

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