Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes N53-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
82349AAACAGCAAAAGAAACGGAAAAAGAAACAACAAAAGDesign primers
146189CACATTAGTACCACC-AACACCAGTACCACC-AACACCAGTACCACC-AACACCAGTACCACCDesign primers
528557AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
645623TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
725129AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
799235TAGAAAAATCAAAAATAAAGAAATCAAAAATAGAAACAACAGAAADesign primers
886389AGAACAAAAACAACAACAAGAAAADesign primers
916466AAAAAGAAGAAGAAAACGAAACAGDesign primers
986312ATAAA-ATAAA-CTAAA-ATAAA-ATATADesign primers
1055416ATAAAAGAAATAAAACAAATACAAGAADesign primers
1070649ACTCCAGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCAGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1070740ATCCGGTAG-ATCCAGTAG-ATCCGGTAG-ATCCGGTAA-ACCCGGTAG-ATCCGGTAG-ATCCAGTAG-ATCCAGTAG-ATCCGGTAGDesign primers
1212198ATCCAGACCCAA-CACCAGACCCAA-CACCAGACCCAADesign primers
1537572GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1751617TCCGCATCAGCGTCAGCATCAGCGTCAGCATCGGCGDesign primers
1751654CAGCATCGGCATCCGCATCAGCGTDesign primers
1752072ATCCGC-ATCCGC-ATCGGC-ATCAGC-GTCAGC-ATCCGCDesign primers
1752130GCATCC-GCATCC-GCATCA-GCATCG-GCGTCG-GCATCC-GCATCC-GCATCG-GCATCC-GCATCADesign primers
1752191CGTCAGCGTCGGCATCCGCATCAGCGTCGGCATCCGCGTCAGCATCCGCATCAGDesign primers
1752259TCGGCA-TCCGCA-TCCGCA-TCAGCADesign primers
1752289TCGGCA-TCCGCA-TCCGCA-TCAGCADesign primers
1752316GCGTCGGCATCC-GCGTCGGCATCC-GCATCAGCATCC-GCATCCGCATCCDesign primers
1752385TCGGCATCCGCATCAGCGTCAGCATCCGCGTCAGCATCCGCGTCAGCATCGGCATCCGCATCCGCATCAGCATCGGCATCCGCATCGGCATCAGCGTCGGCATCCGCATCGGCGTCAGCADesign primers
1752513CATCAGCGTCAGCATCCGCATCGGCATCAGCGTCAGCATCGGCATCCGCATCAGCATCGGDesign primers
1752581TCCGCATCAGCGTCGGCATCCGCGTCAGCGTCAGCGDesign primers
1752618CGGCATCCGCATCAGCGTCGGCATCAGCGTCAGCATCCGCATCCGCATCCGCATCGGCATCAGCATCCGCGTCGGCATCCGCATCTGCATCCGCATCGGCATCAGCATCCGCGTCAGCATCAGCGTDesign primers
1752745AGCATC-AGCGTC-AGCATC-GGCATC-GGCATC-CGCATC-TGCATC-AGCATCDesign primers
1752794GCGTCCGCATCCGCGTCAGCGTCGGCGTCAGCATCCGCATCCDesign primers
1752855CGTCGGCATCCGCATCCGCATCAGCATCGGCATCCGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCCGCATCCGCATCAGCATCCGDesign primers
1752946ATCCGCGTCGGCATCCGCATCAGCGTCGGCGTCAGCATCCGCGTCGGCATCAGTDesign primers
1753001GGCATC-AGCATC-AGCATC-AGCATC-AGCATC-GGCATCDesign primers
1753038GCGTCGGCATCAGCGTCGGCATCCGCATCGGCGTCADesign primers
1753075CATCCGCGTCAGCATCAGCGTCAGCATCCGCGTCAGCATCCGCATCGGCATCCGCATCAGDesign primers
1753136GTCAGCATCCGCGTCGGCATCCGCATCGGCATCCGCGTCAGCATCCGCDesign primers
1753185TCAGCGTCGGCATCGGCGTCAGCATCCGCATCGGCGTCAGCATCCGCATCGGCGDesign primers
1753240CAGCATCCGCGTCAGCATCCGCATCGGCGTCAGCATCCGCATCCGCATCAGCGTDesign primers
1753295AGCGTCGGCATCAGCGTCAGCATCGGCGTCCGCATCDesign primers
1753332GCATCGGCGTCAGCATCCGCATCAGCATCAGCGTCGDesign primers
2218166CAGAATCAAAATCATAATCAGAAGDesign primers
2251410TTAAATCTACATAACTTAAATTTGCACAACTTAAATCTGCATAACDesign primers
2251456TAAATTTGCAACTCTTAAATTTGCATAACTTAAATCTGCACGTCTTAAATCTGCATGTCTDesign primers
2261210TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2484818ATC-ATC-ATC-ATC-TTC-ATC-TTC-ATCDesign primers
2487431CTAATTCTGATTCTAATTGTAATTDesign primers
2609776CACTAA-CACTAA-CACGAA-CGCTAADesign primers

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